Rogers, Mark F., Shihab, Hashem A., Mort, Matthew, Cooper, David ORCID: https://orcid.org/0000-0002-8943-8484, Gaunt, Tom R. and Campbell, Colin 2018. FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. Bioinformatics 34 (3) , pp. 511-513. 10.1093/bioinformatics/btx536 |
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Abstract
Summary: We present FATHMM-XF, a method for predicting pathogenic point mutations in the human genome. Drawing on an extensive feature set, FATHMM-XF outperforms competitors on benchmark tests, particularly in non-coding regions where the majority of pathogenic mutations are likely to be found. Availability and implementation: The FATHMM-XF web server is available at http://fathmm.bio compute.org.uk/fathmm-xf/, and as tracks on the Genome Tolerance Browser: http://gtb.biocom pute.org.uk. Predictions are provided for human genome version GRCh37/hg19. The data used for this project can be downloaded from: http://fathmm.biocompute.org.uk/fathmm-xf/
Item Type: | Article |
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Date Type: | Publication |
Status: | Published |
Schools: | Medicine |
Publisher: | Oxford University Press (OUP): Policy B - Oxford Open Option B |
ISSN: | 1367-4803 |
Date of First Compliant Deposit: | 17 October 2017 |
Date of Acceptance: | 4 September 2017 |
Last Modified: | 11 Jun 2023 10:45 |
URI: | https://orca.cardiff.ac.uk/id/eprint/105493 |
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