Beaton, Ainsley, Lood, Cédric, Cunningham-Oakes, Edward, MacFadyen, Alison, Mullins, Alex J. ![]() ![]() |
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Abstract
Pseudomonas baetica strain a390T is the type strain of this recently described species and here we present its high-contiguity draft genome. To celebrate the 16th International Conference on Pseudomonas, the genome of P. baetica strain a390T was sequenced using a unique combination of Ion Torrent semiconductor and Oxford Nanopore methods as part of a collaborative community-led project. The use of high-quality Ion Torrent sequences with long Nanopore reads gave rapid, high-contiguity and -quality, 16-contig genome sequence. Whole genome phylogenetic analysis places P. baetica within the P. koreensis clade of the P. fluorescens group. Comparison of the main genomic features of P. baetica with a variety of other Pseudomonas spp. suggests that it is a highly adaptable organism, typical of the genus. This strain was originally isolated from the liver of a diseased wedge sole fish, and genotypic and phenotypic analyses show that it is tolerant to osmotic stress and to oxytetracycline.
Item Type: | Article |
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Date Type: | Publication |
Status: | Published |
Schools: | Biosciences |
Publisher: | Oxford University Press (OUP) |
ISSN: | 0378-1097 |
Date of First Compliant Deposit: | 28 January 2021 |
Date of Acceptance: | 22 March 2018 |
Last Modified: | 05 May 2023 07:17 |
URI: | https://orca.cardiff.ac.uk/id/eprint/137975 |
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