Enhancing research through image analysis workshops: Experiences and best practices

Marcotti, Stefania, Jones, Martin L., Slater, Thomas J. A. ORCID: https://orcid.org/0000-0003-0372-1551 and Barry, David J. 2025. Enhancing research through image analysis workshops: Experiences and best practices. Microscopy Research & Technique 88 (4) , pp. 922-935. 10.1002/jemt.24769

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Abstract

Modern microscopy systems allow researchers to generate large volumes of image data with relative ease. However, the challenge of analyzing these data effectively is often hindered by a lack of computational skills. This bottleneck negatively impacts both research reproducibility and efficiency, as researchers frequently rely on manual or semi‐automated analysis methods. Interactive image analysis workshops offer a valuable solution, equipping researchers with the skills and tools needed to automate image processing tasks. In this paper, we share our experiences and best practices from conducting such workshops, which emphasize the use of open‐source software like ImageJ, FIJI, and Python‐based tools such as JupyterLab and napari. We discuss key considerations for workshop design, logistics, and outcomes, while highlighting common pitfalls to avoid. Using two recent workshops as case studies, we also present strategies for optimizing participant engagement and learning. Our insights offer practical guidance for planning and conducting image analysis workshops and serve as a starting point for researchers looking to establish similar training initiatives and enrich their local imaging communities.

Item Type:	Article
Date Type:	Publication
Status:	Published
Schools:	Research Institutes & Centres > Cardiff Catalysis Institute (CCI) Schools > Chemistry
Publisher:	Wiley
ISSN:	1059-910X
Funders:	Company of Biologists, Cancer Research UK, UK Medical Research Council, Wellcome Trust, Biotechnology and Biological Sciences Research Council
Date of First Compliant Deposit:	19 December 2024
Date of Acceptance:	27 November 2024
Last Modified:	08 Apr 2025 14:07
URI:	https://orca.cardiff.ac.uk/id/eprint/174858

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