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Mitochondria regulate MR1 protein expression and produce self-metabolites that activate MR1-restricted T cells

Prota, Gennaro, Berloffa, Giuliano, Awad, Wael, Vacchini, Alessandro, Chancellor, Andrew, Schaefer, Verena, Constantin, Daniel, Littler, Dene R., Colombo, Rodrigo, Nosi, Vladimir, Mori, Lucia, Rossjohn, Jamie ORCID: https://orcid.org/0000-0002-2020-7522 and De Libero, Gennaro 2025. Mitochondria regulate MR1 protein expression and produce self-metabolites that activate MR1-restricted T cells. Proceedings of the National Academy of Sciences 122 (20) , e2418525122. 10.1073/pnas.2418525122

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Abstract

Mitochondria coordinate several metabolic pathways, producing metabolites that influence the immune response in various ways. It remains unclear whether mitochondria impact antigen presentation by the MHC-class-I-related antigen-presenting molecule, MR1, which presents small molecules to MR1-restricted T-lymphocytes. Here, we demonstrate that mitochondrial complex III and the enzyme dihydroorotate dehydrogenase are essential for the cell-surface expression of MR1 and for generating uridine- and thymidine-related compounds that bind to MR1 and are produced upon oxidation by reactive oxygen species. One mitochondria-derived immunogenic formylated metabolite we identified is 5-formyl-deoxyuridine (5-FdU). Structural studies indicate that 5-FdU binds in the A’-antigen-binding pocket of MR1, positioning the deoxyribose toward the surface of MR1 for TCR interaction. 5-FdU stimulates specific T cells and detects circulating T cells when loaded onto MR1-tetramers. 5-FdU-reactive cells resemble adaptive T cells and express the phenotypes of naïve, memory, and effector cells, indicating prior in vivo stimulation. These findings suggest that mitochondria may play a role in MR1-mediated immune surveillance.

Item Type: Article
Date Type: Published Online
Status: Published
Schools: Schools > Medicine
Publisher: National Academy of Sciences
ISSN: 0027-8424
Date of First Compliant Deposit: 20 May 2025
Date of Acceptance: 11 March 2025
Last Modified: 21 May 2025 10:30
URI: https://orca.cardiff.ac.uk/id/eprint/178385

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