Chaudhary, Saurabh 2023. Exploring small RNA in food crops: techniques and approaches. Guleria, Praveen, Kumar, Vineet and Mo, Beixin, eds. Plant Small RNA in Food Crops, Elsevier, pp. 109-127. (10.1016/B978-0-323-91722-3.00016-6) |
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Chaudhary, Saurabh and Sharma, Prakash C. 2022. Transcriptome Sequencing and Analysis of Seabuckthorn (Hippophae Sp.). Sharma, Prakash C., ed. The Seabuckthorn Genome, Springer, pp. 231-246. (10.1007/978-3-031-11276-8_11) |
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Jabre, Ibtissam, Chaudhary, Saurabh, WIlson, Cornelia M., Staiger, Dorothee and Syed, Naeem
2022.
Stochastic Variation in DNA Methylation Modulates Nucleosome Occupancy and Alternative Splicing in Arabidopsis thaliana.
Plants
11
(9)
, 1105.
10.3390/plants11091105
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Chaudhary, Saurabh, Jabre, Ibtisaam and Syed, Naeem H. 2021. Epigenetic differences in an identical genetic background modulate alternative splicing in A. thaliana. Genomics 113 , pp. 3476-3486. 10.1016/j.ygeno.2021.08.006 |
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Chaudhary, Saurabh, Grover, Atul and Sharma, Prakash Chand
2021.
MicroRNAs: potential targets for developing stress-tolerant crops.
Life
11
(4)
, pp. 289-309.
10.3390/life11040289
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Jabre, Ibtissam, Chaudhary, Saurabh, Guo, Wenbin, Kalyna, Maria, Reddy, Anireddy S. N., Chen, Weizhong, Zhang, Runxuan, Wilson, Cornelia and Syed, Naeem H.
2021.
Differential nucleosome occupancy modulates alternative splicing in Arabidopsis thaliana.
New Phytologist
229
(4)
, pp. 1937-1945.
10.1111/nph.17062
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Skalska, Aleksandra, Stritt, Christoph, Wyler, Michele, Williams, Hefin W., Vickers, Martin, Han, Jiwan, Tuna, Metin, Savas Tuna, Gulsemin, Susek, Karolina, Swain, Martin, Wóycicki, Rafal K., Chaudhary, Saurabh, Corke, Fiona, Doonan, John H., Roulin, Anne C., Hasterok, Robert and Mur, Luis A. J.
2020.
Genetic and methylome variation in Turkish brachypodium distachyon accessions differentiate two geographically Distinct subpopulations.
International Journal of Molecular Sciences
21
(18)
, 6700.
10.3390/ijms21186700
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Khokhar, Waqas, Hassan, Musa A., Reddy, Anireddy S. N., Chaudhary, Saurabh, Jabre, Ibtissam, Byrne, Lee J. and Syed, Naeem H.
2019.
Genome-wide identification of splicing quantitative trait loci (sQTLs) in diverse ecotypes of Arabidopsis thaliana.
Frontiers in Plant Science
10
, 1160.
10.3389/fpls.2019.01160
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Chaudhary, Saurabh, Khokhar, Waqas, Jabre, Ibtissam, Reddy, Anireddy S. N., Byrne, Lee J., Wilson, Cornelia M. and Syed, Naeem H.
2019.
Alternative splicing and protein diversity: plants versus animals.
Frontiers in Plant Science
10
, 708.
10.3389/fpls.2019.00708
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Chaudhary, Saurabh, Jabre, Ibtissam, Reddy, Anireddy S.N., Staiger, Dorothee and Syed, Naeem H.
2019.
Perspective on alternative splicing and proteome complexity in plants.
Trends in Plant Science
24
(6)
, pp. 496-506.
10.1016/j.tplants.2019.02.006
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Jabre, Ibtissam, Reddy, Anireddy S. N., Kalyna, Maria, Chaudhary, Saurabh, Khokhar, Waqas, Byrne, Lee J., Wilson, Cornelia M. and Syed, Naeem H.
2019.
Does co-transcriptional regulation of alternative splicing mediate plant stress responses?
Nucleic Acids Research
47
(6)
, 2716–2726.
10.1093/nar/gkz121
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Sinha, Subodh, Sevanthi V., Amitha, Chaudhary, Saurabh, Tyagi, Punit, Venkadesan, Sureshkumar, Rani, Manju and Mandal, Pranab
2018.
Transcriptome analysis of two rice varieties contrasting for nitrogen use efficiency under chronic N starvation reveals differences in chloroplast and starch metabolism-related genes.
Genes
9
(4)
, 206.
10.3390/genes9040206
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Shekhar Rai, Peeyush, Chaudhary, Saurabh and Chand Sharma, Prakash
2018.
Expressed sequence tags (ESTs)?based computational identification of novel and conserved microRNAs in turmeric (Curcuma longa L.).
Journal of Applied Biotechnology & Bioengineering
5
(2)
, pp. 112-119.
10.15406/jabb.2018.05.00125
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Chaudhary, Saurabh and Sharma, Prakash C.
2016.
Next generation sequencing-based exploration of genomes and transcriptomes of medicinal plants.
Indian Journal of Plant Physiology
21
(4)
, 489–503.
10.1007/s40502-016-0258-8
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Chaudhary, Saurabh and Sharma, Prakash C.
2015.
DeepSAGE based differential gene expression analysis under cold and freeze stress in Seabuckthorn (Hippophae rhamnoides L.).
PLoS ONE
10
(3)
, e0121982.
10.1371/journal.pone.0121982
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Jain, Ankit, Chaudhary, Saurabh and Sharma, Prakash Chand 2014. Mining of microsatellites using next generation sequencing of seabuckthorn (Hippophae rhamnoides L.) transcriptome. Physiology and Molecular Biology of Plants 20 (1) , pp. 115-123. 10.1007/s12298-013-0210-6 |
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Ghangal, Rajesh, Chaudhary, Saurabh, Jain, Mukesh, Purty, Ram Singh and Chand Sharma, Prakash
2013.
Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome.
PLoS ONE
8
(8)
, e72516.
10.1371/journal.pone.0072516
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