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Morris, Arthur V., Price, Anna and Connor, Tom ORCID: https://orcid.org/0000-0003-2394-6504 2023. Afanc: a metagenomics tool for variant level disambiguation of NGS datasets. [Online]. bioRXiv. Available at: https://doi.org/10.1101/2023.10.05.560444
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Cotton, S., McHugh, M.P., Dewar, R., Haas, J.G., Templeton, K., Robson, Samuel C., Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Loman, Nicholas J., Golubchik, Tanya, Martinez Nunez, Rocio T., Bonsall, David, Rambaut, Andrew, Snell, Luke B., Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Prieto, Jacqui A., Saeed, Kordo, Jackson, David K., Houlihan, Catherine, Frampton, Dan, Hamilton, William L., Witney, Adam A., Bucca, Giselda, Pope, Cassie F., Moore, Catherine, Thomson, Emma C., Cutino-Moguel, Teresa, Harrison, Ewan M., Smith, Colin P., Rogan, Fiona, Beckwith, Shaun M., Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A., Randell, Paul, Jackson, Leigh M., Ariani, Cristina V., Gonçalves, Sónia, Fairley, Derek J., Loose, Matthew W., Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L., Aanensen, David M., Barrett, Jeffrey C., Kele, Beatrix, Aggarwal, Dinesh, Shepherd, James G., Curran, Martin D., Parmar, Surendra, Parker, Matthew D., Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P., Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F., Byott, Matthew, Carabelli, Alessandro M., Templeton, Kate E., Peacock, Sharon J., de Silva, Thushan I., Wang, Dennis, Langford, Cordelia F., Sillitoe, John, Gunson, Rory N., Cottrell, Simon, O'Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J., Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J., Mahungu, Tabitha W., Liggett, Steven, Beckett, Angela H., Holden, Matthew TG., Levett, Lisa J., Osman, Husam, Hassan-Ibrahim, Mohammed O., Simpson, David A., Chand, Meera, Gupta, Ravi K., Darby, Alistair C., Paterson, Steve, Pybus, Oliver G., Volz, Erik M., de Angelis, Daniela, Robertson, David L., Page, Andrew J., Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R., Wong, Nick, Taha, Yusri, Erkiert, Michelle J., Spencer Chapman, Michael H., Dewar, Rebecca, McHugh, Martin P., Mookerjee, Siddharth, Aplin, Stephen, Harvey, Matthew, Sass, Thea, Umpleby, Helen, Wheeler, Helen, McKenna, James P., Warne, Ben, Taylor, Joshua F., Chaudhry, Yasmin, Izuagbe, Rhys, Jahun, Aminu S., Young, Gregory R., McMurray, Claire, McCann, Clare M., Nelson, Andrew, Elliott, Scott, Lowe, Hannah, Price, Anna, Crown, Matthew R., Rey, Sara, Roy, Sunando, Temperton, Ben, Shaaban, Sharif, Hesketh, Andrew R., Laing, Kenneth G., Monahan, Irene M., Heaney, Judith, Pelosi, Emanuela, Silviera, Siona, Wilson-Davies, Eleri, Fryer, Helen, Adams, Helen, du Plessis, Louis, Johnson, Rob, Harvey, William T., Hughes, Joseph, Orton, Richard J., Spurgin, Lewis G., Bourgeois, Yann, Ruis, Chris, O'Toole, Áine, Gourtovaia, Marina, Sanderson, Theo, Fraser, Christophe, Edgeworth, Jonathan, Breuer, Judith, Michell, Stephen L., Todd, John A., John, Michaela, Buck, David, Gajee, Kavitha, Kay, Gemma L., Heyburn, David, Charalampous, Themoula, Alcolea-Medina, Adela, Kitchman, Katie, McNal, Alan, Pritch, David T., Dervisevic, Samir, Muir, Peter, Robinson, Esther, Vipond, Barry B., Ramadan, Newara A., Jeanes, 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Eileen, Hubb, Jonathan, Lackenby, Angie, Lee, David, Manesis, Nikos, Mbisa, Tamyo, Platt, Steven, Twohig, Katherine A., Morgan, Mari, Aydin, Alp, Baker, David J., Foster-Nyarko, Ebenezer, Prosolek, Sophie J., Rudder, Steven, Baxter, Chris, Carvalho, Sílvia F., Lavin, Deborah, Mariappan, Arun, Radulescu, Clara, Singh, Aditi, Tang, Miao, Morcrette, Helen, Bayzid, Nadua, Cotic, Marius, Balcazar, Carlos E., Gallagher, Michael D., Maloney, Daniel, Stanton, Thomas D., Williamson, Kathleen A., Manley, Robin, Michelsen, Michelle L., Sambles, Christine M., Studholme, David J., Warwick-Dugdale, Joanna, Eccles, Richard, Gemmell, Matthew, Gregory, Richard, Hughes, Margaret, Nelson, Charlotte, Rainbow, Lucille, Vamos, Edith E., Webster, Hermione J., Whitehead, Mark, Wierzbicki, Claudia, Angyal, Adrienn, Green, Luke R., Whiteley, Max, Betteridge, Emma, Bronner, Iraad F., Farr, Ben W., Goodwin, Scott, Lensing, Stefanie V., McCarthy, Shane A., Quail, Michael A., Rajan, Diana, Redshaw, Nicholas M., Scott, Carol, Shirley, Lesley, Thurston, Scott AJ., Rowe, Will, Gaskin, Amy, Le-Viet, Thanh, Bonfield, James, Liddle, Jennifier and Whitwham, Andrew 2023. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes. Journal of Hospital Infection 135 , pp. 28-36. 10.1016/j.jhin.2023.02.010
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Willett, Brian J., Grove, Joe, MacLean, Oscar A., Wilkie, Craig, De Lorenzo, Giuditta, Furnon, Wilhelm, Cantoni, Diego, Scott, Sam, Logan, Nicola, Ashraf, Shirin, Manali, Maria, Szemiel, Agnieszka, Cowton, Vanessa, Vink, Elen, Harvey, William T., Davis, Chris, Asamaphan, Patawee, Smollett, Katherine, Tong, Lily, Orton, Richard, Hughes, Joseph, Holland, Poppy, Silva, Vanessa, Pascall, David J., Puxty, Kathryn, da Silva Filipe, Ana, Yebra, Gonzalo, Shaaban, Sharif, Holden, Matthew T. G., Pinto, Rute Maria, Gunson, Rory, Templeton, Kate, Murcia, Pablo R., Patel, Arvind H., Klenerman, Paul, Dunachie, Susanna, Dunachie, Susanna, Klenerman, Paul, Barnes, Eleanor, Brown, Anthony, Adele, Sandra, Kronsteiner, Barbara, Murray, Sam M., Abraham, Priyanka, Deeks, Alexandra, Ansari, M. Azim, de Silva, Thushan, Turtle, Lance, Moore, Shona, Austin, James, Richter, Alex, Duncan, Christopher, Payne, Rebecca, Ash, Amy, Koshy, Cherian, Kele, Beatrix, Cutino-Moguel, Teresa, Fairley, Derek J., McKenna, James P., Curran, Tanya, Adams, Helen, Fraser, Christophe, Bonsall, David, Fryer, Helen, Lythgoe, Katrina, Thomson, Laura, Golubchik, Tanya, Murray, Abigail, Singleton, Dawn, Beckwith, Shaun M., Mantzouratou, Anna, Barrow, Magdalena, Buchan, Sarah L., Reynolds, Nicola, Warne, Ben, Maksimovic, Joshua, Spellman, Karla, McCluggage, Kathryn, John, Michaela, Beer, Robert, Afifi, Safiah, Morgan, Sian, Mack, Andrew, Marchbank, Angela, Price, Anna, Morris, Arthur, Bresner, Catherine ORCID: https://orcid.org/0000-0003-2673-9762, Kitchen, Christine, Merrick, Ian, Southgate, Joel, Guest, Martyn, Jones, Owen, Munn, Robert, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Whalley, Thomas, Workman, Trudy, Fuller, William, Patel, Amita, Patel, Bindi, Nebbia, Gaia, Edgeworth, Jonathan, Snell, Luke B., Batra, Rahul, Charalampous, Themoula, Beckett, Angela H., Shelest, Ekaterina, Robson, Samuel C., Underwood, Anthony P., Taylor, Ben E. W., Yeats, Corin A., Aanensen, David M., Abudahab, Khalil, Menegazzo, Mirko, Joseph, Amelia, Clark, Gemma, Howson-Wells, Hannah C., Berry, Louise, Khakh, Manjinder, Lister, Michelle M., Boswell, Tim, Fleming, Vicki M., Holmes, Christopher W., McMurray, Claire L., Shaw, Jessica, Tang, Julian W., Fallon, Karlie, Odedra, Mina, Willford, Nicholas J., Bird, Paul W., Helmer, Thomas, Williams, Lesley-Anne, Sheriff, Nicola, Campbell, Sharon, Raviprakash, Veena, Blakey, Victoria, Moore, Christopher, Sang, Fei, Debebe, Johnny, Carlile, Matthew, Loose, Matthew W., Holmes, Nadine, Wright, Victoria, Torok, M. Estee, Hamilton, William L., Carabelli, Alessandro M., Jermy, Andrew, Blane, Beth, Churcher, Carol M., Ludden, Catherine, Aggarwal, Dinesh, Westwick, Elaine, Brooks, Ellena, McManus, Georgina M., Galai, Katerina, Smith, Ken, Smith, Kim S., Cox, MacGregor, Fragakis, Mireille, Maxwell, Patrick, Judges, Sarah, Peacock, Sharon J., Feltwell, Theresa, Kenyon, Anita, Eldirdiri, Sahar, Davis, Thomas, Taylor, Joshua F., Tan, Ngee Keong, Zarebski, Alex E., Gutierrez, Bernardo, Raghwani, Jayna, du Plessis, Louis, Kraemer, Moritz U. G., Pybus, Oliver G., Francois, Sarah, Attwood, Stephen W., Vasylyeva, Tetyana I., Jahun, Aminu S., Goodfellow, Ian G., Georgana, Iliana, Pinckert, Malte L., Hosmillo, Myra, Izuagbe, Rhys, Chaudhry, Yasmin, Ryan, Felicity, Lowe, Hannah, Moses, Samuel, Bedford, Luke, Cargill, James S., Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Shah, Divya, Lee, Jack C. 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I., Eltringham, Gary, Collins, Jennifer, Waugh, Sheila, Burton-Fanning, Shirelle, Taha, Yusri, Jeanes, Christopher, Gomes, Andrea N., Murray, Darren R., Kimuli, Maimuna, Dobie, Donald, Ashfield, Paula, Best, Angus, Percival, Benita, Moles-Garcia, Emma, Ashford, Fiona, Mirza, Jeremy, Crawford, Liam, Mayhew, Megan, Cumley, Nicola, Megram, Oliver, Frampton, Dan, Heaney, Judith, Byott, Matthew, Houlihan, Catherine, Williams, Charlotte A., Nastouli, Eleni, Lowe, Helen L., Hartley, John A., Breuer, Judith, Maftei, Laurentiu, Ensell, Leah, Cotic, Marius, Mondani, Matteo, Driscoll, Megan, Bayzid, Nadua, Williams, Rachel J., Roy, Sunando, Mahanama, Adhyana I. 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T., Williamson, Kathleen A., Gallagher, Michael D., Medd, Nathan, Colquhoun, Rachel, Stanton, Thomas D., Williams, Thomas, Hill, Verity, Jeffries, Aaron R., Temperton, Ben, Sambles, Christine M., Studholme, David J., Warwick-Dugdale, Joanna, Jackson, Leigh M., Michelsen, Michelle L., Manley, Robin, Michell, Stephen L., Darby, Alistair C., Lucaci, Anita O., Nelson, Charlotte, Wierzbicki, Claudia, Vamos, Edith E., Webster, Hermione J., Jackson, Kathryn A., Rainbow, Lucille, Hughes, Margaret, Whitehead, Mark, Gemmell, Matthew, Iturriza-Gomara, Miren, Eccles, Richard, Gregory, Richard, Haldenby, Sam T., Paterson, Steve, Angyal, Adrienn, Keeley, Alexander J., Foulkes, Benjamin H., Lindsey, Benjamin B., Wang, Dennis, Hornsby, Hailey R., Green, Luke R., Pohare, Manoj, Gallis, Marta, Parker, Matthew D., Whiteley, Max, Smith, Nikki, Wolverson, Paige, Zhang, Peijun, Hansford, Samantha E., Hsu, Sharon N., Louka, Stavroula F., de Silva, Thushan I., Freeman, Timothy M., Mori, Matilde, Park, Emily J., Hill, Jack D., Dey, Jayasree, Ball, Jonathan, Chappell, Joseph G., McClure, Patrick C., Byaruhanga, Timothy, Fanaie, Arezou, Yaze, Geraldine, Hilson, Rachel A., Trebes, Amy, Green, Angie, Buck, David, MacIntyre-Cockett, George, Todd, John A., Bassett, Andrew R., Whitwham, Andrew, Langford, Cordelia F., Rajan, Diana, Kwiatkowski, Dominic, Harrison, Ewan M., Bronner, Iraad F., Tovar-Corona, Jaime M., Liddle, Jennifier, Durham, Jillian, Bellis, Katherine L., Lewis, Kevin, Aigrain, Louise, Redshaw, Nicholas M., Davies, Robert M., Moll, Robin J., McCarthy, Shane A., Lensing, Stefanie V., Leonard, Steven, Farr, Ben W., Scott, Carol, Beaver, Charlotte, Ariani, Cristina V., Weldon, Danni, Jackson, David K., Betteridge, Emma, Tonkin-Hill, Gerry, Johnston, Ian, Martincorena, Inigo, Bonfield, James, Barrett, Jeffrey C., Sillitoe, John, Keatley, Jon-Paul, Oliver, Karen, James, Keith, Shirley, Lesley, Prestwood, Liam, Foulser, Luke, Gourtovaia, Marina, Dorman, Matthew J., Quail, Michael A., Spencer Chapman, Michael H., Park, Naomi R., Livett, Rich, Amato, Roberto, Kay, Sally, Goodwin, Scott, Thurston, Scott A. J., Rajatileka, Shavanthi, Gonçalves, Sónia, Lo, Stephanie, Sanderson, Theo, Maclean, Alasdair, Goldstein, Emily J., Ferguson, Lynne, Tomb, Rachael, Catalan, Jana, Jones, Neil, Haughney, John, Robertson, David L., Palmarini, Massimo, Ray, Surajit and Thomson, Emma C. 2022. SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology 7 , pp. 1161-1179. 10.1038/s41564-022-01143-7
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I., Waugh, Sheila, Gomes, Andrea N., Kimuli, Maimuna, Murray, Darren R., Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Driscoll, Megan, Ensell, Leah, Lowe, Helen L., Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J., Cogger, Benjamin J., Easton, Lisa J., Huckson, Hannah, Lewis, Jonathan, Lowdon, Sarah, Malone, Cassandra S., Munemo, Florence, Mutingwende, Manasa, Nicodemi, Roberto, Podplomyk, Olga, Somassa, Thomas, Beggs, Andrew, Richter, Alex, Cormie, Claire, Dias, Joana, Forrest, Sally, Higginson, Ellen E., Maes, Mailis, Young, Jamie, Davidson, Rose K., Jackson, Kathryn A., Turtle, Lance, Keeley, Alexander J., Ball, Jonathan, Byaruhanga, Timothy, Chappell, Joseph G., Dey, Jayasree, Hill, Jack D., Park, Emily J., Fanaie, Arezou, Hilson, Rachel A., Yaze, Geraldine, Lo, Stephanie, Afifi, Safiah, Beer, Robert, Maksimovic, Joshua, McCluggage, Kathryn, Spellman, Karla, Bresner, Catherine ORCID: https://orcid.org/0000-0003-2673-9762, Fuller, William, Marchbank, Angela, Workman, Trudy, Shelest, Ekaterina, Debebe, Johnny, Sang, Fei, Zamudio, Marina Escalera, Francois, Sarah, Gutierrez, Bernardo, Vasylyeva, Tetyana I., Flaviani, Flavia, Ragonnet-Cronin, Manon, Smollett, Katherine L., Broos, Alice, Mair, Daniel, Nichols, Jenna, Nomikou, Kyriaki, Tong, Lily, Tsatsani, Ioulia, O?Brien, Prof Sarah, Rushton, Steven, Sanderson, Roy, Perkins, Jon, Cotton, Seb, Gallagher, Abbie, Allara, Elias, Pearson, Clare, Bibby, David, Dabrera, Gavin, Ellaby, Nicholas, Gallagher, Eileen, Hubb, Jonathan, Lackenby, Angie, Lee, David, Manesis, Nikos, Mbisa, Tamyo, Platt, Steven, Twohig, Katherine A., Morgan, Mari, Aydin, Alp, Baker, David J., Foster-Nyarko, Ebenezer, Prosolek, Sophie J., Rudder, Steven, Baxter, Chris, Carvalho, Sílvia F., Lavin, Deborah, Mariappan, Arun, Radulescu, Clara, Singh, Aditi, Tang, Miao, Morcrette, Helen, Bayzid, Nadua, Cotic, Marius, Balcazar, Carlos E., Gallagher, Michael D., Maloney, Daniel, Stanton, Thomas D., Williamson, Kathleen A., Manley, Robin, Michelsen, Michelle L., Sambles, Christine M., Studholme, David J., Warwick-Dugdale, Joanna, Eccles, Richard, Gemmell, Matthew, Gregory, Richard, Hughes, Margaret, Nelson, Charlotte, Rainbow, Lucille, Vamos, Edith E., Webster, Hermione J., Whitehead, Mark, Wierzbicki, Claudia, Angyal, Adrienn, Green, Luke R., Whiteley, Max, Betteridge, Emma, Bronner, Iraad F., Farr, Ben W., Goodwin, Scott, Lensing, Stefanie V., McCarthy, Shane A., Quail, Michael A., Rajan, Diana, Redshaw, Nicholas M., Scott, Carol, Shirley, Lesley, Thurston, Scott A. J., Rowe, Will, Gaskin, Amy, Le-Viet, Thanh, Bonfield, James, Liddle, Jennifier, Whitwham, Andrew, Ashby, Deborah, Barclay, Wendy, Taylor, Graham, Cooke, Graham, Ward, Helen, Darzi, Ara, Riley, Steven, Chadeau-Hyam, Marc, Donnelly, Christl A. and Elliott, Paul 2022. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2. BMC Infectious Diseases 22 (1) , 647. 10.1186/s12879-022-07628-4
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G., Levett, Lisa J., Osman, Husam, Hassan-Ibrahim, Mohammed O., Simpson, David A., Chand, Mrera, Gupta, Ravi K., Darby, Alistair C., Paterson, Steve, Pybus, Oliver G., Volz, Erik M., de Angelis, Daniela, Robertson, David L., Page, Andrew J., Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R., Wong, Nick, Taha, Yusri, Erkiert, Michelle J., Chapman, Michael H. 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I., Waugh, Sheila, Gomes, Andrea N., Kimuli, Maimuna, Murray, Darren R., Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Driscoll, Megan, Ensell, Leah, Lowe, Helen L., Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J., Cogger, Benjamin J., Easton, Lisa J., Huckson, Hannah, Lewis, Jonathan, Lowdon, Sarah, Malone, Cassandra S., Munemo, Florence, Mutingwende, Manasa, Nicodemi, Roberto, Podplomyk, Olga, Somassa, Thomas, Beggs, Andrew, Richter, Alex, Cormie, Claire, Dias, Joana, Forrest, Sally, Higginson, Ellen E., Maes, Mailis, Young, Jamie, Davidson, Rose K., Jackson, Kathryn A., Turtle, Lance, Keeley, Alexander J., Ball, Jonathan, Byaruhanga, Timothy, Chappell, Joseph G., Dey, Jayasree, Hill, Jack D., Park, Emily J., Fanaie, Arezou, Hilson, Rachel A., Yaze, Geraldine, Lo, Stephanie, Afifi, Safiah, Beer, Robert, Maksimovic, Joshua, McCluggage, Kathryn, Spellman, Karla, Bresner, Catherine ORCID: https://orcid.org/0000-0003-2673-9762, Fuller, William, Marchbank, Angela, Workman, Trudy, Shelest, Ekaterina, Debebe, Johnny, Sang, Fei, Zamudio, Marina Escalera, Francois, Sarah, Gutierrez, Bernardo, Vasylyeva, Tetyana I., Flaviani, Flavia, Ragonnet-Cronin, Manon, Smollett, Katherine L., Broos, Alice, Mair, Daniel, Nichols, Jenna, Nomikou, Kyriaki, Tong, Lily, Tsatsani, Ioulia, O'Brien, Sarah, Rushton, Steven, Sanderson, Roy, Perkins, Jon, Cotton, Seb, Gallagher, Abbie, Allara, Elias, Pearson, Clare, Bibby, David, Dabrera, Gavin, Ellaby, Nicholas, Gallagher, Eileen, Hubb, Jonathan, Lackenby, Angie, Lee, David, Manesis, Nikos, Mbisa, Tamyo, Platt, Steven, Twohig, Katherine A., Morgan, Mari, Aydin, Alp, Baker, David J., Foster-Nyarko, Ebenezer, Prosolek, Sophie J., Rudder, Steven, Baxter, Chris, Carvalho, Sílvia F., Lavin, Deborah, Mariappan, Arun, Radulescu, Clara, Singh, Aditi, Tang, Miao, Morcrette, Helen, Bayzid, Nadua, Cotic, Marius, Balcazar, Carlos E., Gallagher, Michael D., Maloney, Daniel, Stanton, Thomas D., Williamson, Kathleen A., Manley, Robin, Michelsen, Michelle L., Sambles, Christine M., Studholme, David J., Warwick-Dugdale, Joanna, Eccles, Richard, Gemmell, Matthew, Gregory, Richard, Hughes, Margaret, Nelson, Charlotte, Rainbow, Lucille, Vamos, Edith E., Webster, Hermione J., Whitehead, Mark, Wierzbicki, Claudia, Angyal, Adrienn, Green, Luke R., Whiteley, Max, Betteridge, Emma, Bronner, Iraad F., Farr, Ben W., Goodwin, Scott, Lensing, Stefanie V., McCarthy, Shane A., Quail, Michael A., Rajan, Diana, Redshaw, Nicholas M., Scott, Carol, Shirley, Lesley, Thurston, Scott A. 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Estee, Goodfellow, Ian G., Prieto, Jacqui A., Saeed, Kordo, Houlihan, Catherine, Frampton, Dan, Hamilton, William L., Witney, Adam A., Bucca, Giselda, Pope, Cassie F., Moore, Catherine, Thomson, Emma C., Harrison, Ewan M., Smith, Colin P., Rogan, Fiona, Beckwith, Shaun M., Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A., Randell, Paul, Jackson, Leigh M., Gonçalves, Sónia, Fairley, Derek J., Loose, Matthew W., Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Smith, Darren L., Aanensen, David M., Aggarwal, Dinesh, Shepherd, James G., Curran, Martin D., Parmar, Surendra, Parker, Matthew D., Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P., Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F., Byott, Matthew, Carabelli, Alessandro M., Templeton, Kate E., de Silva, Thushan I., Wang, Dennis, Langford, Cordelia F., Gunson, Rory N., Cottrell, Simon, O'Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J., Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J., Mahungu, Tabitha W., Liggett, Steven, Beckett, Angela H., Holden, Matthew T. 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K., Samaraweera, Buddhini, Girgis, Sophia T., Hansford, Samantha E., Green, Angie, Bellis, Katherine L., Dorman, Matthew J., Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morris, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L., Stockton, Joanne, Henderson, John H., Hollis, Amy, Stanley, William, Yew, Wen C., Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M., Fina, Laia, Gatica-Wilcox, Bree, Gilbert, Lauren, Graham, Lee, Hey, Jessica, Hilvers, Ember, Jones, Sophie, Jones, Hannah, Kumziene-Summerhayes, Sara, McKerr, Caoimhe, Powell, Jessica, Pugh, Georgia, Taylor, Sarah, Trotter, Alexander J., Williams, Charlotte A., Kermack, Leanne M., Foulkes, Benjamin H., Gallis, Marta, Hornsby, Hailey R., Louka, Stavroula F., Pohare, Manoj, Wolverson, Paige, Zhang, Peijun, MacIntyre-Cockett, George, Trebes, Amy, Moll, Robin J., Ferguson, Lynne, Goldstein, Emily J., Maclean, Alasdair, Tomb, Rachael, Starinskij, Igor, Thomson, Laura, Southgate, Joel, Kraemer, Moritz U. 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T., Medd, Nathan, Scher, Emily, Keatley, Jon-Paul, Curran, Tanya, Morgan, Sian, Maxwell, Patrick, Smith, Ken, Eldirdiri, Sahar, Kenyon, Anita, Holmes, Alison H., Price, James R., Wyatt, Tim, Mather, Alison E., Skvortsov, Timofey, Hartley, John A., Guest, Martyn, Kitchen, Christine, Merrick, Ian, Munn, Robert, Bertolusso, Beatrice, Lynch, Jessica, Vernet, Gabrielle, Kirk, Stuart, Wastnedge, Elizabeth, Stanley, Rachael, Idle, Giles, Bradley, Declan T., Poyner, Jennifer, Mori, Matilde, Jones, Owen, Wright, Victoria, Brooks, Ellena, Churcher, Carol M., Fragakis, Mireille, Galai, Katerina, Jermy, Andrew, Judges, Sarah, McManus, Georgina M., Smith, Kim S., Westwick, Elaine, Attwood, Stephen W., Bolt, Frances, Davies, Alisha, De Lacy, Elen, Downing, Fatima, Edwards, Sue, Meadows, Lizzie, Jeremiah, Sarah, Smith, Nikki, Charalampous, Themoula, Patel, Amita, Berry, Louise, Boswell, Tim, Fleming, Vicki M., Howson-Wells, Hannah C., Joseph, Amelia, Khakh, Manjinder, Lister, Michelle M., Bird, Paul W., Fallon, Karlie, Helmer, Thomas, McMurray, Claire L., Odedra, Mina, Shaw, Jessica, Tang, Julian W., Willford, Nicholas J., Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S., Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack C. D., Shah, Divya, Alcolea, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, El Bouzidi, Kate, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad S. Y., George, Ryan P., Machin, Nicholas W., Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, Mariyam, Greenaway, Jane, Cole, Kevin, Clarke, Phillip, Duckworth, Nichola, Walsh, Sarah, Bicknell, Kelly, Impey, Robert, Wyllie, Sarah, Hopes, Richard, Bishop, Chloe, Chalker, Vicki, Gifford, Laura, Molnar, Zoltan, Auckland, Cressida, Evans, Cariad, Johnson, Kate, Partridge, David G., Raza, Mohammad, Baker, Paul, Bonner, Stephen, Essex, Sarah, Murray, Leanne J., Lawton, Andrew I., Burton-Fanning, Shirelle, Payne, Brendan A. 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J., Rowe, Will, Gaskin, Amy, Le-Viet, Thanh, Liddle, Jennifier, Birney, Ewan, Volz, Erik, Funk, Sebastian, Kwiatkowski, Dominic, Chand, Meera, Martincorena, Inigo, Barrett, Jeffrey C. and Gerstung, Moritz 2021. Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature 600 (7889) , pp. 506-511. 10.1038/s41586-021-04069-y

Morris, Arthur, Pachebat, Justin, Tyson, Graeme, Robinson, Guy, Chalmers, Rachel and Swain, Martin 2020. Generating reliable genome assemblies of intestinal protozoans from clinical samples for the purpose of biomarker discovery. Presented at: Biomedical Engineering Systems and Technologies BIOSTEC 2019, Prague, Czech Republic, 22-24 February 2019. Published in: Roque, Ana, Tomczyk, Arkadiusz, De Maria, Elisabetta, Putze, Felix, Moucek, Roman, Fred, Ana and Gamboa, Hugo eds. Communications in Computer and Information Science. , vol.1211 Springer, Cham, pp. 216-241. 10.1007/978-3-030-46970-2_11

Morris, Arthur, Robinson, Guy, Swain, Martin T. and Chalmers, Rachel M. 2019. Direct sequencing of Cryptosporidium in stool samples for public health. Frontiers in Public Health 7 10.3389/fpubh.2019.00360

Swain, Martin, Chalmers, Rachel, Robinson, Guy, Pachebat, Justin and Morris, Arthur 2019. Identifying and resolving genome misassembly issues important for biomarker discovery in the protozoan parasite, cryptosporidium. Presented at: 12th International Joint Conference on Biomedical Engineering Systems and Technologies, Prague, Czech Republic, 22–24 February 2019. Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies. SciTePress. , vol.3 pp. 90-100. 10.5220/0007397200900100

Castro, Pablo David Jimenez and Morris, Arthur V 2017. Burrowing mites in companion animals. UK-VET Companion animal 22 (8) , pp. 446-452. 10.12968/coan.2017.22.8.446

Castro, Pablo David Jimenez and Morris, Arthur V 2016. Feline lungworm: biology, epidemiology, diagnosis and treatment. The Veterinary Nurse 7 (9) , pp. 508-513. 10.12968/vetn.2016.7.9.508

This list was generated on Mon Oct 7 12:42:34 2024 BST.