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Number of items: 25.

Zelenka, Natalie R., Di Cara, Nina, Sharma, Kieren, Sarvaharman, Seeralan, Ghataora, Jasdeep S., Parmeggiani, Fabio ORCID: https://orcid.org/0000-0001-8548-1090, Nivala, Jeff, Abdallah, Zahraa S., Marucci, Lucia and Gorochowski, Thomas E. 2024. Data hazards in synthetic biology. Synthetic Biology 9 (1) , ysae010. 10.1093/synbio/ysae010
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Moreno-Tortolero, Rafael O., Luo, Yijie, Parmeggiani, Fabio ORCID: https://orcid.org/0000-0001-8548-1090, Skaer, Nick, Walker, Robert, Serpell, Louise C., Holland, Chris and Davis, Sean A. 2024. Molecular organization of fibroin heavy chain and mechanism of fibre formation in Bombyx mori. Communications Biology 7 , 786. 10.1038/s42003-024-06474-1
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Sarvaharman, Seeralan, Neary, Timon E., Gorochowski, Thomas E. and Parmeggiani, Fabio ORCID: https://orcid.org/0000-0001-8548-1090 2024. Scalable design of repeat protein structural dynamics via probabilistic coarse-grained models. [Online]. medRxiv. Available at: https://doi.org/10.1101/2024.03.13.584748
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Bethel, Neville, Borst, Andrew, Parmeggiani, Fabio ORCID: https://orcid.org/0000-0001-8548-1090, Bick, Matthew, Brunette, TJ, Nguyen, Hannah, Kang, Alex, Bera, Asim, Carter, Lauren, Miranda, Marcos, Kibler, Ryan, Lamb, Mila, Li, Xinting, Banumathi, Sankaran and Baker, David 2023. Precisely patterned nanofibres made from extendable protein multiplexes. Nature Chemistry 15 (Decemb) , pp. 1664-1671. 10.1038/s41557-023-01314-x

Moreno-Tortolero, R.O., Luo, Y., Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090, Skaer, N., Walker, R., Serpell, L., Holland, C. and Davis, S.A. 2023. Silk road revealed: Mechanism of silk fibre formation inBombyx mori. [Online]. bioRxiv: Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2023.06.02.543394

Gidley, F. and Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090 2021. Repeat proteins: designing new shapes and functions for solenoid folds. Current Opinion in Structural Biology 68 , pp. 208-214. 10.1016/j.sbi.2021.02.002

Yeh, C, Obendorf, L and Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090 2020. Elfin UI. Frontiers in Bioengineering and Biotechnology 8 , 568318. 10.3389/fbioe.2020.568318

Geiger-Schuller, K, Sforza, K, Yuhas, M, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Baker, D and Barrick, D 2018. Extreme stability in de novo-designed repeat arrays is determined by unusually stable short-range interactions. Proceedings of the National Academy of Sciences 115 (29) , pp. 7539-7544. 10.1073/pnas.1800283115

Yeh, C, Brunette, T, Baker, D, McIntosh-Smith, S and Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090 2018. Elfin: An algorithm for the computational design of custom three-dimensional structures from modular repeat protein building blocks. Journal of Structural Biology X 201 (2) , pp. 100-107. 10.1016/j.jsb.2017.09.001

Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090 and Huang, P 2017. Designing repeat proteins. Current Opinion in Structural Biology 45 (8) , pp. 116-123. 10.1016/j.sbi.2017.02.001

Mills, J, Sheffler, W, Ener, M, Almhjell, P, Oberdorfer, G, Pereira, J, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Sankaran, B, Zwart, P and Baker, D 2016. Computational design of a homotrimeric metalloprotein with a trisbipyridyl core. Proceedings of the National Academy of Sciences 113 (52) , pp. 15012-15017. 10.1073/pnas.1600188113

Fallas, JA, Ueda, G, Sheffler, W, Nguyen, V, McNamara, D, Sankaran, B, Pereira, J, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Brunette, T, Cascio, D, Yeates, T, Zwart, P and Baker, D 2016. Computational design of self-assembling cyclic protein homo-oligomers. Nature Chemistry 9 (4) , pp. 353-360. 10.1038/nchem.2673

Reichen, Christian, Hansen, Simon, Forzani, Cristina, Honegger, Annemarie, Fleishman, Sarel J., Zhou, Ting, Parmeggiani, Fabio ORCID: https://orcid.org/0000-0001-8548-1090, Ernst, Patrick, Madhurantakam, Chaithanya, Ewald, Christina, Mittl, Peer R.E., Zerbe, Oliver, Baker, David, Caflisch, Amedeo and Plückthun, Andreas 2016. Computationally designed armadillo repeat proteins for modular peptide recognition. Journal of Molecular Biology 428 (22) , pp. 4467-4489. 10.1016/j.jmb.2016.09.012

Brunette, TJ, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Huang, PS, Bhabha, G, Ekiert, D, Tsutakawa, S, Hura, G, Tainer, J and Baker, D 2015. Exploring the repeat protein universe through computational protein design. Nature 528 (7583) , pp. 580-584. 10.1038/nature16162

Doyle, L, Hallinan, J, Bolduc, J, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Baker, D, Stoddard, B and Bradley, P 2015. Rational design of alpha-helical tandem repeat proteins with closed architectures. Nature 528 (7583) , pp. 585-588. 10.1038/nature16191

Huang, P, Feldmeier, K, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Velasco, D, Hoecker, B and Baker, D 2015. De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy. Nature Chemical Biology 12 (1) , pp. 29-34. 10.1038/nchembio.1966

Park, K., Shen, B. W., Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090, Huang, P. S., Stoddard, B. and Baker, D. 2015. Control of repeat-protein curvature by computational protein design. Nature Structural and Molecular Biology 22 (2) , pp. 167-174. 10.1038/nsmb.2938

Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Huang, P., Vorobiev, S., Xiao, R., Park, K., Caprari, S., Su, M., Seetharaman, J., Mao, L., Janjua, H., Montelione, G., Hunt, J. and Baker, D. 2014. A general computational approach for repeat protein design. Journal of Molecular Biology 427 (2) , pp. 563-575. 10.1016/j.jmb.2014.11.005

Prindle, M.J., Schmitt, M.W., Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090 and Loeb, L.A. 2013. A substitution in the fingers domain of DNA polymerase delta reduces fidelity by altering nucleotide discrimination in the catalytic site. Journal of Biological Chemistry 288 (8) , pp. 5572-5580. 10.1074/jbc.M112.436410

Baxter, S, Lambert, AR, Kuhar, R, Jarjour, J, Kulshina, N, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Danaher, P, Gano, J, Baker, D, Stoddard, B and Scharenberg, A 2012. Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases. Nucleic Acids Research 40 (16) , pp. 7985-8000. 10.1093/nar/gks502

Alfarano, P, Varadamsetty, G, Ewald, C, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Pellarin, R, Zerbe, O, Plückthun, A and Caflisch, A 2012. Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy. Protein Science 21 (9) , pp. 1298-1314. 10.1002/pro.2117

Reichen, C, Varadamsetty, G, Tremmel, D, Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Honegger, A, Fleishmann, S, Baker, D, Madhurantakam, C, Mittl, P, Gruetter, M and Plueckthun, A 2012. Design and Selection of Armadillo Repeat Proteins: A novel technology for modular peptide recognition. Protein Science 21 (Supple) , p. 82.

Parmeggiani, F ORCID: https://orcid.org/0000-0001-8548-1090, Pellarin, R, Larsen, A, Varadamsetty, G, Stumpp, M, Zerbe, O, Caflisch, A and Plueckthun, A 2008. Designed armadillo repeat proteins as general peptide-binding scaffolds: Consensus design and computational optimization of the hydrophobic core. Journal of Molecular Biology 376 (5) , pp. 1282-1304. 10.1016/j.jmb.2007.12.014

Radeghieri, A., Bonoli, M., Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090 and Hochkoeppler, A. 2007. Tyrosine83 is essential for the activity of E-coli galactoside transacetylase. Biochimica Et Biophysica Acta-Proteins and Proteomics 1774 (2) , pp. 243-248. 10.1016/j.bbapap.2006.11.013

Navratilova, I., Papalia, G., Rich, R., Bedinger, D., Brophy, S., Condon, B., Deng, T., Emerick, A., Guan, H. W., Hayden, T., Heutmekers, T., Hoorelbeke, B., McCroskey, M., Murphy, M., Nakagawa, T., Parmeggiani, F. ORCID: https://orcid.org/0000-0001-8548-1090, Qin, X., Rebe, S., Tomasevic, N., Tsang, T., Waddell, M., Zhang, F., Leavitt, S. and Myszka, D. 2007. Thermodynamic benchmark study using Biacore technology. Analytical Biochemistry 364 (1) , pp. 67-77. 10.1016/j.ab.2007.01.031

This list was generated on Sat Nov 8 11:22:07 2025 GMT.


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