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Number of items: 29.

Yu, Shirong, Evans, Katie, Van Eijk, Patrick ORCID: https://orcid.org/0000-0001-9549-555X, Bennett, Mark, Webster, Richard M., Leadbitter, Matthew, Teng, Yummin, Waters, Raymond, Jackson, Stephen P. and Reed, Simon H. ORCID: https://orcid.org/0000-0002-4711-0560 2016. Global genome nucleotide excision repair is organized into domains that promote efficient DNA repair in chromatin. Genome Research 26 , pp. 1376-1387. 10.1101/gr.209106.116
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Waters, Raymond, van Eijk, Patrick ORCID: https://orcid.org/0000-0001-9549-555X and Reed, Simon ORCID: https://orcid.org/0000-0002-4711-0560 2015. Histone modification and chromatin remodeling during NER. DNA Repair 36 , pp. 105-113. 10.1016/j.dnarep.2015.09.013

Zhou, Zheng, Humphryes, Neil, Van Eijk, Patrick ORCID: https://orcid.org/0000-0001-9549-555X, Waters, Raymond, Yu, Shirong, Kraehenbuehl, Rolf, Hartsuiker, Edgar and Reed, Simon H. ORCID: https://orcid.org/0000-0002-4711-0560 2015. UV induced ubiquitination of the yeast Rad4–Rad23 complex promotes survival by regulating cellular dNTP pools. Nucleic Acids Research 43 (15) , pp. 7360-7370. 10.1093/nar/gkv680
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Bennett, Mark Richard, Evans, Katie Ellen, Yu, Shirong, Teng, Yumin, Webster, Richard, Powell, James, Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2015. Sandcastle: software for revealing latent information in multiple experimental ChIP-chip datasets via a novel normalisation procedure. Scientific Reports 5 , 13395. 10.1038/srep13395
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Powell, James Rees, Bennett, Mark Richard, Evans, Katie Ellen, Yu, Shirong, Webster, Richard Michael, Waters, Raymond, Skinner, Nigel and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2015. 3D-DIP-Chip: a microarray-based method to measure genomic DNA damage. Scientific Reports 5 , 7975. 10.1038/srep07975
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Yu, Yachuan, Deng, Yanbo, Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560, Millar, Catherine B. and Waters, Raymond 2013. Histone variant Htz1 promotes histone H3 acetylation to enhance nucleotide excision repair in Htz1 nucleosomes. Nucleic Acids Research 41 (19) , pp. 9006-9019. 10.1093/nar/gkt688
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Powell, J, Bennett, M, Waters, Raymond, Skinner, N and Reed, Simon ORCID: https://orcid.org/0000-0002-4711-0560 2013. Functional genome-wide analysis: a technical review, its developments and its relevance to cancer research. Recent Patents on DNA and Gene Sequences 7 (2) , pp. 157-166. 10.2174/18722156113079990020

Waters, Raymond, Evans, Katie Ellen, Bennett, Mark Richard, Yu, Shirong and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2012. Nucleotide excision repair in cellular chromatin: studies with yeast from nucleotide to gene to genome. International Journal of Molecular Sciences 13 (9) , pp. 11141-11164. 10.3390/ijms130911141
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Waters, Raymond, Teng, Yumin, Bennett, Mark Richard, Evans, Katie Ellen, Zhuang-Jackson, Huayun, Higgs, Andy and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2012. Emerging technologies in genotoxicity testing: measuring DNA damage in entire genomes at high resolution [Abstract]. Mutagenesis 27 (1) , p. 112. 10.1093/mutage/ger068

Bennett, Mark Richard, Evans, Katie Ellen, Teng, Yumin, Leadbitter, Matthew, Yu, Shirong, Waters, Raymond, Giles, Peter James ORCID: https://orcid.org/0000-0003-3143-6854 and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2012. Bioinformatic analyses of genome wide nucleotide excision repair datasets in Saccharomyces cerevisiae [Abstract]. Mutagenesis 27 (1) , p. 121. 10.1093/mutage/ger068

Yu, Shirong, Teng, Yumin, Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2011. How chromatin is remodelled during DNA repair of UV-induced DNA damage in Saccharomyces cerevisiae. PLoS Genetics 7 (6) , e1002124. 10.1371/journal.pgen.1002124
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Teng, Yumin, Bennett, Mark Richard, Evans, Katie Ellen, Zhuang Jackson, Huayun, Higgs, Andy, Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 and Waters, Raymond 2011. A novel method for the genome-wide high resolution analysis of DNA damage. Nucleic Acids Research 39 (2) , e10. 10.1093/nar/gkq1036

Irizar, Miren Agurtzane, Yu, Yachuan, Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560, Louis, Edward J. and Waters, Raymond 2010. Silenced yeast chromatin is maintained by Sir2 in preference to permitting histone acetylations for efficient NER. Nucleic Acids Research 38 (14) , pp. 4675-4686. 10.1093/nar/gkq242
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Taschner, Michael, Harreman, Michelle, Teng, Yumin, Gill, Hefin, Anindya, Roy, Maslen, Sarah L., Skehel, J. Mark, Waters, Raymond and Svejstrup, Jesper Q. 2010. A role for checkpoint kinase-dependent rad26 phosphorylation in transcription-coupled DNA repair in saccharomyces cerevisiae. Molecular and Cellular Biology 30 (2) , pp. 436-446. 10.1128/MCB.00822-09
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Yu, Shirong, Smirnova, Julia, Friedberg, Errol C., Stillman, Bruce, Akiyama, Masahiro, Owen-Hughes, Tom, Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2009. ABF1-binding sites promote efficient global genome nucleotide excision repair. Journal of Biological Chemistry 284 (2) , pp. 966-973. 10.1074/jbc.M806830200

Waters, Raymond, Teng, Yumin, Yu, Yachuan, Yu, Shirong and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2009. Tilting at windmills? The nucleotide excision repair of chromosomal DNA. DNA Repair 8 (2) , pp. 146-152. 10.1016/j.dnarep.2008.11.001

Teng, Yumin, Yu, Shirong, Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 and Waters, Raymond 2009. Lux ex tenebris: Nucleotide resolution DNA repair and nucleosome mapping. Methods 48 (1) , pp. 23-34. 10.1016/j.ymeth.2009.02.017

Tremblay, M., Teng, Yaofei, Paquette, M., Waters, Raymond and Conconi, A. 2009. Nucleotide excision repair in active (non-nucleosome) and inactive (nucleosome) rDNA chromatin [Abstract]. Biochemistry and Cell Biology 87 (1) , p. 378. 10.1139/O08-904

Tremblay, Maxime, Teng, Yumin, Paquette, Michel, Waters, Raymond and Conconi, Antonio 2008. Complementary roles of yeast rad4p and rad34p in nucleotide excision repair of active and inactive rRNA gene chromatin. Molecular and Cellular Biology 28 (24) , pp. 7504-7513. 10.1128/MCB.00137-08
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Teng, Yumin, Liu, Hairong, Gill, Hefin, Yu, Yachuan, Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2008. Saccharomyces cerevisiae Rad16 mediates ultraviolet-dependent histone H3 acetylation required for efficient global genome nucleotide-excision repair. EMBO Reports 9 (1) , pp. 97-102. 10.1038/sj.embor.7401112

Teng, Yumin, Liu, Hairong, Gill, Hefin, Yu, Yachuan, Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2007. Saccharomyces cerevisiae Rad16 mediates UV dependent histone H3 acetylation required for efficient global genome nucleotide excision repair. [Technical Report]. EMBO Reports. Available at: http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retri...

Ferreiro, J. A., Powell, Ned George, Karabetsou, N., Mellor, J. and Waters, Raymond 2006. Roles for Gcn5p and Ada2p in transcription and nucleotide excision repair at the Saccharomyces cerevisiae MAET16 gene. Nucleic Acids Research 34 (3) , pp. 976-985. 10.1093/nar/gkj501

Yu, Yachuan, Teng, Yumin, Liu, Hairong, Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 and Waters, Raymond 2005. UV irradiation stimulates histone acetylation and chromatin remodeling at a repressed yeast locus. Proceedings of the National Academy of Sciences 102 (24) , pp. 8650-8655. 10.1073/pnas.0501458102

Yu, Shirong, Owen-Hughes, Tom, Friedberg, Errol C., Waters, Raymond and Reed, Simon Huw ORCID: https://orcid.org/0000-0002-4711-0560 2004. The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair. DNA repair 3 (3) , pp. 277-287. 10.1016/j.dnarep.2003.11.004

Ferreiro, A, Powell, Ned George, Karabetsou, N., Kent, Nicholas A. ORCID: https://orcid.org/0000-0002-4114-1307, Mellor, J. and Waters, Raymond 2004. Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus. Nucleic Acids Research 32 (5) , pp. 1617-1626. 10.1093/nar/gkh324

Morse, Nerys R., Meniel, Valerie and Waters, Raymond 2002. Photoreactivation of UV-induced cyclobutane primidine dimers in the MFA2 gene of S. cerevisiae. Nucleic Acids Research 30 (8) , pp. 1799-1807. 10.1093/nar/30.8.1799

Teng, Yumin, Yu, Yachuan and Waters, Raymond 2002. The Saccharomyces cerevisiae histone acetyltransferase Gcn5 has a role in the photoreactivation and nucleotide excision repair of UV induced cyclobutane pyrimidine dimers in the MFA2 gene. Journal of molecular biology 316 (3) , pp. 489-499. 10.1006/jmbi.2001.5383

Yu, Shirong, Teng, Yumin, Lowndes, Noel F. and Waters, Raymond 2001. RAD9, RAD24, RAD16 and RAD26 are required for the inducible nucleotide excision repair of UV-induced cyclobutane pyrimidine dimmers from the transcribed and non-transcribed regions of the Sacchoromyces cerevisiae MFA2 gene. Mutation Research/DNA Repair 485 (3) , pp. 229-236. 10.1016/S0921-8777(01)00061-1

Teng, Yumin, Yu, Shirong and Waters, Raymond 2001. The mapping of nucleosomes and regulatory protein binding sites on the Saccharomyces cerevisiae MFA2 gene: a high resolution approach. Nucleic Acids Research 29 (13) , E64-4. 10.1093/nar/29.13.e64

This list was generated on Sat Aug 2 08:01:34 2025 BST.


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