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Number of items: 23.

White, Rhys T., Bull, Matthew J., Barker, Clare R., Arnott, Julie M., Wootton, Mandy, Jones, Lim S., Howe, Robin A., Morgan, Mari, Ashcroft, Melinda M., Forde, Brian M., Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504 and Beatson, Scott A. 2024. Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales. Nature Communications 15 (1) , 1371. 10.1038/s41467-024-45608-1
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Watson, Sophie E., McKinney, Melissa A., Pindo, Massimo, Bull, Matthew J., Atwood, Todd C., Hauffe, Heidi C. and Perkins, Sarah E. ORCID: https://orcid.org/0000-0002-7457-2699 2021. Diet-driven mercury contamination is associated with polar bear gut microbiota. Scientific Reports 11 , 23372. 10.1038/s41598-021-02657-6
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Rushton, Laura, Donoghue, Denise, Bull, Matthew, Jay, Peter and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2021. Construction and evaluation of a bioluminescent Pseudomonas aeruginosa reporter for use in preservative efficacy testing. Microbiology 167 (8) , 001072. 10.1099/mic.0.001072
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Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Mullins, Alex J ORCID: https://orcid.org/0000-0001-5804-9008, Jenner, Matthew, Bull, Matthew J, Dashti, Yousef, Spilker, Theodore, Parkhill, Julian, Connor, Thomas R ORCID: https://orcid.org/0000-0003-2394-6504, LiPuma, John J, Challis, Gregory L and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2021. Kill and cure: genomic phylogeny and bioactivity of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles. Microbial Genomics 17 (1) , 000515. 10.1099/mgen.0.000515
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Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Bull, Matthew, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Parkhill, Julian, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Challis, Gregory L. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2020. Genomic assemblies of members of Burkholderia and related genera as a resource for natural product discovery. Microbiology Resource Announcements 9 , e00485-20. 10.1128/MRA.00485-20
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Southgate, J.A., Bull, M.J., Brown, C.M., Watkins, J., Corden, S., Southgate, B., Moore, C. and Connor, T.R. ORCID: https://orcid.org/0000-0003-2394-6504 2020. Influenza classification from short reads with VAPOR facilitates robust mapping pipelines and zoonotic strain detection for routine surveillance applications. Bioinformatics 36 (6) , pp. 1681-1688. 10.1093/bioinformatics/btz814
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Watson, Sophie E., Hauffe, Heidi C., Bull, Matthew J., Atwood, Todd C., McKinney, Melissa A., Pindo, Massimo and Perkins, Sarah E. ORCID: https://orcid.org/0000-0002-7457-2699 2019. Global change-driven use of onshore habitat impacts polar bear faecal microbiota. ISME Journal 13 , pp. 2916-2926. 10.1038/s41396-019-0480-2
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Yang-Turner, Fan, Volk, Denis, Fowler, Philip, Swann, Jeremy, Bull, Matthew, Hoosdally, Sarah, Connor, Thomas, Peto, Tim and Crook, Derrick 2019. Scalable pathogen pipeline platform (SP^3): enabling unified genomic data analysis with elastic cloud computing. Presented at: IEEE 12th International Conference on Cloud Computing (CLOUD), Milan, Italy, 8-13 Jul 2019. Proceedings of IEEE 12th International Conference on Cloud Computing (CLOUD). IEEE, pp. 478-480. 10.1109/CLOUD.2019.00083

Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Bull, Matthew J., Jenner, Matthew, Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Green, Angharad E., Neill, Daniel R., Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Parkhill, Julian, Challis, Gregory L. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2019. Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria. Nature Microbiology 4 , pp. 996-1005. 10.1038/s41564-019-0383-z
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Weiser, Rebecca ORCID: https://orcid.org/0000-0003-3983-3272, Green, Angharad E., Bull, Matthew J., Cunningham-Oakes, Edward, Jolley, Keith A., Maiden, Martin C.J., Hall, Amanda J., Winstanley, Craig, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Donoghue, Denise, Amezquita, Alejandro, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2019. Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes. Microbial Genomics , 000276. 10.1099/mgen.0.000276
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Mitchelmore, Philip J., Randall, Joanna, Bull, Matthew, Moore, Karen A., O'Neill, Paul A., Paszkiewicz, Konrad, Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790, Scotton, Chris J., Sheldon, Christopher D., Withers, Nicholas J. and Brown, Alan R. 2018. Molecular epidemiology of Pseudomonas aeruginosa in an unsegregated bronchiectasis cohort sharing hospital facilities with a cystic fibrosis cohort. Thorax 73 (7) , pp. 677-679. 10.1136/thoraxjnl-2016-209889
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Green, Angharad, Amezquita, Alejandro, Le-Marc, Yvan, Bull, Matthew, Connor, Thomas ORCID: https://orcid.org/0000-0003-2394-6504 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2018. The consistent differential expression of genetic pathways following exposure of an industrial Pseudomonas aeruginosa strain to preservatives and a laundry detergent formulation. FEMS Microbiology Letters 365 (9) , fny062. 10.1093/femsle/fny062
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Loveridge, Edric Joel, Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Bull, Matthew J., Moody, Suzy C., Kahl, Malgorzata W, Khan, Zainab, Neilson, Louis, Tomeva, Marina, Adams, Sarah Elizabeth, Wood, Andrew C., Daniel, Rodriguez-Martin, Pinel, Ingrid, Julian, Parkhill, Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 and Crosby, John 2017. Reclassification of the specialized metabolite producer pseudomonas mesoacidophila ATCC 31433 as a member of the burkholderia cepacia complex. Journal of Bacteriology 199 (13) , e00125-17. 10.1128/JB.00125-17
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Gilpin, D. F., Nixon, K. A., Bull, Matthew, McGrath, S. J., Sherrard, L., Rolain, J. M., Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790, Elborn, J. S. and Tunney, M. M. 2017. Evidence of persistence of Prevotella spp. in the cystic fibrosis lung. Journal of Medical Microbiology 66 (6) , pp. 825-832. 10.1099/jmm.0.000500

Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Loman, Nicholas J., Thompson, Simon, Smith, Andy, Southgate, Joel, Poplawski, Radoslaw, Bull, Matthew J., Richardson, Emily, Ismail, Matthew, Elwood-Thompson, Simon, Kitchen, Christine, Guest, Martyn, Bakke, Marius, Sheppard, Samuel K. and Pallen, Mark J. 2016. CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community. Microbial Genomics 2 (9) , 000086. 10.1099/mgen.0.000086
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Depoorter, Eliza, Bull, Matthew J., Peeters, Charlotte, Coenye, Tom, Vandamme, Peter and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2016. Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers. Applied Microbiology and Biotechnology 100 (12) , pp. 5215-5229. 10.1007/s00253-016-7520-x

Corfe, Bernard M., Harden, Charlotte J., Bull, Matthew J. and Garaiova, Iveta 2015. The multifactorial interplay of diet, the microbiome and appetite control: current knowledge and future challenges. Proceedings of the Nutrition Society 74 (3) , pp. 235-244. 10.1017/S0029665114001670

Flight, William G., Smith, Ann, Paisey, Christopher, Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239, Bull, Matthew J., Norville, Phillip J., Mutton, Ken J., Webb, A. Kevin, Bright-Thomas, Rowland J., Jones, Andrew M., Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 and McAdam, A. J. 2015. Rapid detection of emerging pathogens and loss of microbial diversity associated with severe lung disease in cystic fibrosis. Journal of Clinical Microbiology 53 (7) , pp. 2022-2029. 10.1128/JCM.00432-15

Bull, Matthew J., Jolley, Keith A., Bray, James E., Aerts, Maarten, Vandamme, Peter, Maiden, Martin C. J., Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2014. The domestication of the probiotic bacterium Lactobacillus acidophilus. Scientific Reports 4 , 7202. 10.1038/srep07202
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Bull, Matthew J., Plummer, Sue, Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2013. The life history of 'Lactobacillus acidophilus' as a probiotic: a tale of revisionary taxonomy, misidentification and commercial success. FEMS Microbiology Letters 349 (2) , pp. 77-87. 10.1111/1574-6968.12293

Baxter, Caroline G., Rautemaa, Riina, Jones, Andrew M., Webb, A. Kevin, Bull, Matthew J., Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 and Denning, David W. 2013. Intravenous antibiotics reduce the presence of Aspergillus in adult cystic fibrosis sputum. Thorax 68 (7) , pp. 652-657. 10.1136/thoraxjnl-2012-202412

Bull, Matthew J. 2013. Molecular genetic characterisation of probiotic bacteria: Lactobacillus acidophilus and Bifidobacterium species. PhD Thesis, Cardiff University.
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Bull, Matthew J., Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239, Vandamme, Peter, Plummer, Sue and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2012. Minimum taxonomic criteria for bacterial genome sequence depositions and announcements. Journal of Microbiological Methods 89 (1) , pp. 18-21. 10.1016/j.mimet.2012.02.008

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