ORCA
Online Research @ Cardiff
Browse by Current Cardiff authors
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Silvester, Reshma, Webster, Gordon  ORCID: https://orcid.org/0000-0002-9530-7835, Perry, William B., Farkas, Kata, Rushton, Laura, Craine, Noel, Cross, Gareth, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Jones, Davey L.
2025.
Genome-resolved metagenomics uncovers antimicrobial resistance gene carriers in hospital and municipal wastewater environments.
Science of the Total Environment
1002
, 180607.
10.1016/j.scitotenv.2025.180607
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Byrnes, Neil Andrew, Silvester, Reshma, Cross, Gareth, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Jones, Davey L. and Kasprzyk-Hordern, Barbara
2025.
Assessing the risk of antimicrobial resistance and potential environmental harm through national-scale surveillance of antimicrobials in hospital and community wastewater.
Environment International
202
, 109606.
10.1016/j.envint.2025.109606
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Silvester, Reshma, Perry, William B., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Rushton, Laura, Baldwin, Amy ORCID: https://orcid.org/0000-0002-2162-3771, Pass, Daniel A. ORCID: https://orcid.org/0000-0003-2799-8432, Byrnes, Neil Andrew, Farkas, Kata, Heginbothom, Margaret, Craine, Noel, Cross, Gareth, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Kasprzyk-Hordern, Barbara, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Jones, Davey L.
2025.
Metagenomic profiling of hospital wastewater: A comprehensive national scale analysis of antimicrobial resistance genes and opportunistic pathogens.
Journal of Infection
90
(6)
, 106503.
10.1016/j.jinf.2025.106503
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Baldwin, Amy J. ORCID: https://orcid.org/0000-0002-2162-3771, Cunningham-Oakes, Edward, Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Dodds, Rachel, Hill, Katja E. ORCID: https://orcid.org/0000-0002-8590-0117, Lee, Li Ling, Leggett, Mark J., Topping, Andrew W. and Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209
2025.
Complete Genome Sequence of Pseudomonas sp. PP3, a dehalogenase-producing bacterium, confirms the unusual mobile genetic element DEH.
Microbiology Resource Announcements
14
(5)
, e00089-25.
10.1128/mra.00089-25
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Ashraf, Urooj, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Razzaq, Annum, Afshan, Najam-ul-Sehar, Christofides, Sarah R., Naseer, Arooj, Ali, Muhammad, Niazi, Abdul Rehman, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Khalid, Abdul Nasir
2025.
Inocybe crenata sp. nov. (subsec. Geophyllinae, sect. Tardae) from conifer dominated forests of Pakistan.
Mycobiology
53
(2)
, pp. 135-143.
10.1080/12298093.2024.2398273
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Silvester, Reshma, Perry, William B., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Rushton, Laura, Baldwin, Amy ORCID: https://orcid.org/0000-0002-2162-3771, Pass, Daniel A., Healey, Nathaniel, Farkas, Kata, Craine, Noel, Cross, Gareth, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Jones, Davey L.
2025.
Metagenomics unveils the role of hospitals and wastewater treatment plants on the environmental burden of antibiotic resistance genes and opportunistic pathogens.
Science of the Total Environment
961
, 178403.
10.1016/j.scitotenv.2025.178403
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Pellett, Cameron, Farkas, Kata, Williams, Rachel C., Wade, Matthew J., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Jameson, Eleanor, Cross, Gareth and Jones, Davey L.
2024.
Multi-factor normalisation of viral counts from wastewater improves the detection accuracy of viral disease in the community.
Environmental Technology and Innovation
36
, 103720.
10.1016/j.eti.2024.103720
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Jones, Gethin, Nelson, Andrew, Chadwick, David R., Cobley, Steve, Jones, Davey L., Perrett, Stephanie, Perry, William Bernard, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Williams, Rachel C. and Thomas, Daniel Rhys
2024.
Evaluation of wastewater surveillance for SARS-CoV-2 in a prison population: a mixed-methods approach.
Frontiers in Public Health
12
, 1462186.
10.3389/fpubh.2024.1462186
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Farkas, Kata, Fletcher, Jessica, Oxley, James, Ridding, Nicola, Williams, Rachel C., Woodhall, Nick, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Cross, Gareth and Jones, Davey L.
2024.
Implications of long-term sample storage on the recovery of viruses from wastewater and biobanking.
Water Research
265
, 122209.
10.1016/j.watres.2024.122209
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Knight, Margaret E., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Perry, William B., Baldwin, Amy ORCID: https://orcid.org/0000-0002-2162-3771, Rushton, Laura, Pass, Daniel A. ORCID: https://orcid.org/0000-0003-2799-8432, Cross, Gareth, Durance, Isabelle ORCID: https://orcid.org/0000-0002-4138-3349, Muziasari, Windi, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Farkas, Kata, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Jones, Davey L.
2024.
National-scale antimicrobial resistance surveillance in wastewater: A comparative analysis of HT qPCR and metagenomic approaches.
Water Research
262
, 121989.
10.1016/j.watres.2024.121989
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Williams, Rachel C., Perry, William B., Lambert-Slosarska, Kathryn, Futcher, Ben, Pellett, Cameron, Richardson-O'Neil, India, Paterson, Steve, Grimsley, Jasmine M.S., Wade, Matthew J., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Farkas, Kata and Jones, Davey L.
2024.
Examining the stability of viral RNA and DNA in wastewater: Effects of storage time, temperature, and freeze-thaw cycles.
Water Research
259
, 121879.
10.1016/j.watres.2024.121879
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Jones, Davey L., Bridgman, Mathew, Pellett, Cameron, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, García Delgado, Álvaro, Cross, Gareth, Cobley, Steve, Howard-Jones, Helen, Chadwick, David R. and Farkas, Kata
2024.
Use of wastewater from passenger ships to assess the movement of COVID-19 and other pathogenic viruses across maritime international boundaries.
Frontiers in Public Health
12
, 1377996.
10.3389/fpubh.2024.1377996
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Williams, Rachel C., Farkas, Kata, Garcia-Delgado, Alvaro, Adwan, Latifah, Kevill, Jessica L., Cross, Gareth, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Jones, Davey L.
2024.
Simultaneous detection and characterization of common respiratory pathogens in wastewater through genomic sequencing.
Water Research
256
, 121612.
10.1016/j.watres.2024.121612
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Bydalek, Franciszek, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Barden, Ruth, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Kasprzyk-Hordern, Barbara and Wenk, Jannis
2024.
Microbial community and antimicrobial resistance niche differentiation in a multistage, surface flow constructed wetland.
Water Research
254
, 121408.
10.1016/j.watres.2024.121408
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Perry, William Bernard, Chrispim, Mariana Cardoso, Barbosa, Mikaela Renata Funada, de Souza Lauretto, Marcelo, Razzolini, Maria Tereza Pepe, Nardocci, Adelaide Cassia, Jones, Owen ORCID: https://orcid.org/0000-0002-7300-5510, Jones, Davey L., Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209, Sato, Maria Inês Zanoli, Montagner, Cassiana and Durance, Isabelle ORCID: https://orcid.org/0000-0002-4138-3349
2024.
Cross-continental comparative experiences of wastewater surveillance and a vision for the 21st century.
Science of the Total Environment
919
, 170842.
10.1016/j.scitotenv.2024.170842
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Farkas, Kata, Kevill, Jessica L, Williams, Rachel C, Pântea, Igor, Ridding, Nicola, Lambert-Slosarska, Kathryn, Woodhall, Nick, Grimsley, Jasmine M S, Wade, Matthew J, Singer, Andrew C, Weightman, Andrew J ORCID: https://orcid.org/0000-0002-6671-2209, Cross, Gareth and Jones, Davey L
2024.
Comparative assessment of Nanotrap and polyethylene glycol-based virus concentration in wastewater samples.
FEMS Microbes
5
, xtae007.
10.1093/femsmc/xtae007
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Harbottle, Michael ORCID: https://orcid.org/0000-0002-6443-5340, Smith, Holly-Anne, Kennedy, Julia ORCID: https://orcid.org/0000-0003-4482-6392, Sapsford, Devin ORCID: https://orcid.org/0000-0002-6763-7909, Cleall, Peter ORCID: https://orcid.org/0000-0002-4005-5319, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209 and Ugalde Loo, Carlos ORCID: https://orcid.org/0000-0001-6361-4454
2024.
Microbially mediated energy storage in the pedosphere.
Presented at: EGU General Assembly 2024,
Vienna, Austria,
14-19 April 2024.
EGU General Assembly 2024 - Abstracts.
Copernicus,
10.5194/egusphere-egu24-9593,
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Cuff, Jordan P., Dighe, Shrinivas Nivrutti ORCID: https://orcid.org/0000-0002-2826-8733, Watson, Sophie E., Badell-Grau, Rafael A., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Jones, Davey L. and Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221
2023.
Monitoring SARS-CoV-2 using infoveillance, national reporting data, and wastewater in Wales, United Kingdom: Mixed methods study.
JMIR Infodemiology
3
, e43891.
10.2196/43891
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Smith, Holly-Anne B., Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Sapsford, Devin ORCID: https://orcid.org/0000-0002-6763-7909, Gaskin, Paul, Monis, Paul T., Hoefel, Daniel, Saint, Christopher P., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Maresca, Julia A.
2023.
Sphingopyxis Species Isolated from Sand Filter Biofilm at an Australian Drinking Water Treatment Works.
Microbiology Resource Announcements
10.1128/mra.00249-23
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry A., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Watkins, Andrew J., Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, R. John
2023.
Methanogen activity and microbial diversity in Gulf of Cádiz mud volcano sediments.
Frontiers in Microbiology
14
, 1157337.
10.3389/fmicb.2023.1157337
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Bydalek, Franciszek, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Barden, Ruth, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Kasprzyk-Hordern, Barbara and Wenk, Jannis
2023.
Microplastic biofilm, associated pathogen and antimicrobial resistance dynamics through a wastewater treatment process incorporating a constructed wetland.
Water Research
235
, 119936.
10.1016/j.watres.2023.119936
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Sapsford, Devin J. ORCID: https://orcid.org/0000-0002-6763-7909, Stewart, Douglas I., Sinnett, Dannielle E., Burke, Ian T., Cleall, Peter J. ORCID: https://orcid.org/0000-0002-4005-5319, Harbottle, Michael J. ORCID: https://orcid.org/0000-0002-6443-5340, Mayes, Will, Owen, Nia, Sardo, Ana Margarida and Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209
2023.
Circular economy landfills for temporary storage and treatment of mineral-rich wastes.
Waste and Resource Management
176
(2)
, pp. 77-93.
10.1680/jwarm.22.00008
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Jones, David. L., Rhymes, Jennifer M., Green, Emma, Rimmer, Charlotte, Kevill, Jessica L., Malham, Shelagh K., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Farkas, Kata
2023.
Poor air passenger knowledge of COVID-19 symptoms and behaviour undermines strategies aimed at preventing the import of SARS-CoV-2 into the UK.
Scientific Reports
13
(1)
, 3494.
10.1038/s41598-023-30654-4
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Jones, Davey L., Rhymes, Jennifer M., Wade, Matthew J., Kevill, Jessica L., Malham, Shelagh K., Grimsley, Jasmine M.S., Rimmer, Charlotte, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Farkas, Kata
2023.
Suitability of aircraft wastewater for pathogen detection and public health surveillance.
Science of the Total Environment
856
, 159162.
10.1016/j.scitotenv.2022.159162
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Wade, Matthew J., Lo Jacomo, Anna, Armenise, Elena, Brown, Mathew R., Bunce, Joshua T., Cameron, Graeme J., Fang, Zhou, Farkas, Kata, Gilpin, Deidre F., Graham, David W., Grimsley, Jasmine M.S., Hart, Alwyn, Hoffmann, Till, Jackson, Katherine J., Jones, David L., Lilley, Chris J., McGrath, John W., McKinley, Jennifer M., McSparron, Cormac, Nejad, Behnam F., Morvan, Mario, Quintela-Baluja, Marcos, Roberts, Adrian M.I., Singer, Andrew C., Souque, Célia, Speight, Vanessa L., Sweetapple, Chris, Walker, David, Watts, Glenn, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209 and Kasprzyk-Hordern, Barbara
2022.
Understanding and managing uncertainty and variability for wastewater monitoring beyond the pandemic: Lessons learned from the United Kingdom national COVID-19 surveillance programmes.
Journal of Hazardous Materials
424
(Part B)
, 127456.
10.1016/j.jhazmat.2021.127456
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Christofides, Sarah R, Hiscox, Jennifer, Savoury, Melanie, Boddy, Lynne ORCID: https://orcid.org/0000-0003-1845-6738 and Weightman, Andrew J ORCID: https://orcid.org/0000-0002-6671-2209
2019.
Fungal control of early-stage bacterial community development in decomposing wood.
Fungal Ecology
42
, 100868.
10.1016/j.funeco.2019.100868
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Roberts, M., Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209 and Sapsford, D. J. ORCID: https://orcid.org/0000-0002-6763-7909
2019.
Chapter 8. Potential application of direct and indirect iron bioreduction in resource recovery from iron oxide-bearing wastes.
Macaskie, L, Sapsford, D and Mayes, W, eds.
Resource Recovery from Wastes: Towards a Circular Economy,
pp. 192-212.
(10.1039/9781788016353-00192)
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Weiser, Rebecca ORCID: https://orcid.org/0000-0003-3983-3272, Green, Angharad E., Bull, Matthew J., Cunningham-Oakes, Edward, Jolley, Keith A., Maiden, Martin C.J., Hall, Amanda J., Winstanley, Craig, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Donoghue, Denise, Amezquita, Alejandro, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790
2019.
Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes.
Microbial Genomics
, 000276.
10.1099/mgen.0.000276
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Richardson, Hollian, Rhodes, Glenn, Henrys, Peter, Sedda, Luigi, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Pickup, Roger W.
2019.
Presence of mycobacterium avium subspecies paratuberculosis monitored over varying temporal and spatial scales in river catchments: persistent routes for human exposure.
Microorganisms
7
(5)
, 136.
10.3390/microorganisms7050136
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Parkes, Ronald John, Berlendis, Sabrina ORCID: https://orcid.org/0000-0001-5530-8895, Roussel, Erwan G., Bahruji, Hasliza, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Oldroyd, Anthony, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Bowker, Michael ORCID: https://orcid.org/0000-0001-5075-1089, Davies, Philip R. ORCID: https://orcid.org/0000-0003-4394-766X and Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224
2019.
Rock-crushing derived hydrogen directly supports a methanogenic community: significance for the deep biosphere.
Environmental Microbiology Reports
11
(2)
, pp. 165-172.
10.1111/1758-2229.12723
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Bird, Jordan T., Tague, Eric D., Zinke, Laura, Schmidt, Jenna M., Steen, Andrew D., Reese, Brandi, Marshall, Ian P. G., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209, Castro, Hector F., Campagna, Shawn R. and Lloyd, Karen G.
2019.
Uncultured microbial phyla suggest mechanisms for multi-thousand-year subsistence in Baltic Sea sediments.
mBio
10
(2)
, e02376-18.
10.1128/mBio.02376-18
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Drysdale, Timothy, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209, Watts, Stephen, Dishon, Victoria and Lewis, Richard ORCID: https://orcid.org/0000-0003-1859-0021
2019.
Remote laboratories - Requirements capture for a national pooling infrastructure.
Presented at: AdvanceHE STEM Teaching and Learning Conference 2019,
Birmingham, UK,
30 -31 January 2019.
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Johnston, Sarah, Hiscox, Jennifer, Savoury, Melanie, Boddy, Lynne ORCID: https://orcid.org/0000-0003-1845-6738 and Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209
2019.
Highly competitive fungi manipulate bacterial communities in decomposing beech wood (Fagus sylvativa).
FEMS Microbiology Ecology
95
(2)
10.1093/femsec/fiy225
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Johnston, Sarah, Boddy, Lynne ORCID: https://orcid.org/0000-0003-1845-6738 and Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209
2016.
Bacteria in decomposing wood and their interactions with wood-decay fungi.
FEMS Microbiology Ecology
92
(11)
, fiw179.
10.1093/femsec/fiw179
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Nobu, Masaru K., Dodsworth, Jeremy A., Murugapiran, Senthil K., Rinke, Christian, Gies, Esther A., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Schwientek, Patrick, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Parkes, R. John, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Jørgensen, Bo B., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Liu, Wen-Tso, Hallam, Steven J., Tsiamis, George, Woyke, Tanja and Hedlund, Brian P.
2016.
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.
ISME Journal
10
(2)
, pp. 273-286.
10.1038/ismej.2015.97
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Durance, Isabelle ORCID: https://orcid.org/0000-0002-4138-3349, Bruford, Michael William ORCID: https://orcid.org/0000-0001-6357-6080, Chalmers, Rachel, Chappell, Nick A., Christie, Mike, Cosby, B. Jack, Noble, David, Ormerod, Stephen James ORCID: https://orcid.org/0000-0002-8174-302X, Prosser, Havard, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Woodward, Guy
2016.
The challenges of linking ecosystem services to biodiversity.
Advances in Ecological Research
54
, pp. 87-134.
10.1016/bs.aecr.2015.10.003
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Roberts, Mark, Sapsford, Devin James ORCID: https://orcid.org/0000-0002-6763-7909, Cleall, Peter John ORCID: https://orcid.org/0000-0002-4005-5319, Harbottle, Michael John ORCID: https://orcid.org/0000-0002-6443-5340 and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2016.
In situ microbial dissolution of iron mineral-bearing wastes for metal recovery.
Presented at: 3rd International Symposium on Enhanced Landfill Mining,
Lisbon, Portugal,
February 2016.
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Maceda-Veiga, Alberto, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Canals, Oriol, Salvadó, Humbert, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Cable, Joanne ORCID: https://orcid.org/0000-0002-8510-7055
2015.
Chronic effects of temperature and nitrate pollution on Daphnia magna: Is this cladoceran suitable for widespread use as a tertiary treatment?
Water Research
83
, pp. 141-152.
10.1016/j.watres.2015.06.036
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Roussel, Erwan Georges Philippe, Cragg, Barry Andrew, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Tang, Xiaohong, Williams, Angharad S., Gorra, Roberta, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John
2015.
Complex coupled metabolic and prokaryotic community responses to increasing temperatures in anaerobic marine sediments: critical temperatures and substrate changes.
FEMS Microbiology Ecology
91
(8)
, fiv084.
10.1093/femsec/fiv084
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Pass, Daniel Antony ORCID: https://orcid.org/0000-0003-2799-8432, Morgan, Andrew John, Read, Daniel S., Field, Dawn, Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 and Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221
2015.
The effect of anthropogenic arsenic contamination on the earthworm microbiome.
Environmental Microbiology
17
(6)
, pp. 1884-1896.
10.1111/1462-2920.12712
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O'Sullivan, Louise A., Roussel, Erwan G., Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Hubert, Casey R. J., Bell, Emma, Head, Ian, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224 and Parkes, R. John
2015.
Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure.
ISME Journal
9
, pp. 922-933.
10.1038/ismej.2014.190
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, O'Sullivan, Louise A., Meng, Yiyu, Williams, Angharad S., Sass, A. M., Watkins, Andrew J., Parkes, Ronald John and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2015.
Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.
FEMS Microbiology Ecology
91
(2)
, pp. 1-18.
10.1093/femsec/fiu025
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Rhodes, Glenn, Richardson, Hollian, Hermon-Taylor, John, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209, Higham, Andrew and Pickup, Roger
2014.
Mycobacterium avium Subspecies paratuberculosis: Human Exposure through Environmental and Domestic Aerosols.
Pathogens
3
(3)
, pp. 577-595.
10.3390/pathogens3030577
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Parkes, Ronald John, Cragg, Barry A., Roussel, Erwan Georges Philippe, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224
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A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere: geosphere interactions.
Marine Geology
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Arabidopsis thaliana and Pisum sativum models demonstrate that root colonization is an intrinsic trait of Burkholderia cepacia complex bacteria.
Microbiology
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Studies on prokaryotic populations and processes in subseafloor sediments - an update.
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2014.
Bacterial diversity and community structure in high arsenic aquifers in Hetao Plain of Inner Mongolia, China.
Geomicrobiology Journal
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Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient.
FEMS Microbiology Ecology
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Dynamic microbial community associated with iron-arsenic co-precipitation products from a groundwater storage system in Bangladesh.
Microbial Ecology
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2012.
Changes in methanogenic substrate utilization and communities with depth in a salt-marsh, creek sediment in southern England.
Estuarine, Coastal and Shelf Science
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2011.
Culture-independent analysis of bacterial fuel contamination provides insight into the level of concordance with the standard industry practice of aerobic cultivation.
Applied and Environmental Microbiology
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10.1128/AEM.02317-10
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2011.
Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark under heterotrophic conditions.
FEMS Microbiology Ecology
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Parkes, Ronald John, Linnane, Cathal David, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Hornibrook, Ed R. C. and Horsfield, Brian
2011.
Prokaryotes stimulate mineral H2 formation for the deep biosphere and subsequent thermogenic activity.
Geology
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2011.
Microbial diversity in Frenulata (Siboglinidae, Polychaeta) species from mud volcanoes in the Gulf of Cadiz (NE Atlantic).
Antonie van Leeuwenhoek
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2010.
Chemosynthetic bacteria found in bivalve species from mud volcanoes of the Gulf of Cadiz.
FEMS Microbiology Ecology
73
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10.1111/j.1574-6941.2010.00913.x
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2010.
Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing.
FEMS Microbiology Ecology
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10.1111/j.1574-6941.2010.00848.x
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Parkes, Ronald John, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Watkins, Andrew J., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, O'Sullivan, Louise A. and Cragg, Barry Andrew
2010.
Methods for studying methanogens and methanogenesis in marine sediments.
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2010.
Diversity of gut microbiota increases with aging and starvation in the desert locust.
Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology
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2009.
Culturable prokaryotic diversity of deep, gas hydrate sediments: First use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG).
Environmental Microbiology
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2009.
Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).
Environmental Microbiology
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Fry, John Christopher, Horsfield, Brian, Sykes, Richard, Cragg, Barry A., Heywood, Chloe, Kim, Gwang Tae, Mangelsdorf, Kai, Mildenhall, Dallas C., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Vieth, Andrea, Zink, Klaus G., Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John
2009.
Prokaryotic populations and activities in an interbedded coal deposit, including a previously deeply buried section (1.6–2.3 km) above ∼ 150 Ma basement rock.
Geomicrobiology Journal
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Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments.
Journal of Microbiological Methods
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Prokaryotic biodiversity and activity in the deep subseafloor biosphere.
FEMS Microbiology Ecology
66
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Schmidberger, Jason W., Wilce, Jacqueline A., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Whisstock, James C. and Wilce, Matthew C. J.
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The crystal structure of DehI reveals a new α-haloacid dehalogenase fold and active-site mechanism.
Journal of Molecular Biology
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Dillon, R. J., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Dillon, V. M., Blanford, S. and Charnley, A K.
2008.
Composition of Acridid gut bacterial communities as revealed by 16S rRNA gene analysis.
Journal of Invertebrate Pathology
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Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments.
Journal of Microbiological Methods
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10.1016/j.mimet.2008.08.006
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Schmidberger, J. W., Wilce, J. A., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Wilce, M. C. J.
2008.
Purification, crystallization and preliminary crystallographic analysis of DehI, a group I alpha-haloacid dehalogenase from Pseudomonas putida strain PP3.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications
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2007.
Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE.
FEMS Microbiology Ecology
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Parkes, Ronald John, Cragg, Barry Andrew, Banning, Natasha C., Brock, Fiona, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Fry, John Christopher, Hornibrook, Ed, Pancost, Richard D., Kelly, Sam, Knab, Nina, Jørgensen, Bo B., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453 and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2007.
Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark).
Environmental Microbiology
9
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10.1111/j.1462-2920.2006.01237.x
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O'Sullivan, Louise A., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Jones, Thomas Hefin ORCID: https://orcid.org/0000-0002-7874-3627, Marchbank, Angela Maureen, Tiedje, J. M. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790
2007.
Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis.
Environmental Microbiology
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Fry, John Christopher, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry Andrew, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John
2006.
Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.
FEMS Microbiology Ecology
58
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10.1111/j.1574-6941.2006.00144.x
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Parkes, Ronald John, Cragg, Barry Andrew, Newberry, C. J., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher
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Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.
FEMS Microbiology Ecology
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Watt, Lynsey C., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Fry, John Christopher, Evershed, Richard P., Parkes, Ronald John and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2006.
A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries.
Environmental Microbiology
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10.1111/j.1462-2920.2006.01048.x
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Payne, George William, Ramette, Alban, Rose, Helen Louise, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Jones, Thomas Hefin ORCID: https://orcid.org/0000-0002-7874-3627, Tiedje, James M. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790
2006.
Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species.
FEMS Microbiology Letters
259
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O'Sullivan, Louise A., Rinna, Joachim, Humphreys, Gavin, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John C.
2006.
Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae : Epilithonimonas tenax gen. nov., sp nov and Persicivirga xylanidelens gen. nov., sp nov.
International Journal of Systematic and Evolutionary Microbiology
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2006.
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.
Applied and Environmental Microbiology
72
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10.1128/AEM.00556-06
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Kim, G. T., Webster, G., Wimpenny, J. W. T., Kim, B. H., Kim, H. J. and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2006.
Bacterial community structure, compartmentalization and activity in a microbial fuel cell.
Journal of Applied Microbiology
101
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Lillo, A., Ashley, F. P., Palmer, R. M., Munson, M. A., Kyriacou, L., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Wade, W. G.
2006.
Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets.
Oral Microbiology and Immunology
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Ashelford, Kevin E, Chuzhanova, Nadia, Fry, John Christopher, Jones, Antonia Jane and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
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At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.
Applied and Environmental Microbiology
71
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10.1128/AEM.71.12.7724-7736.2005
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O'Sullivan, Louise A., Rinna, Joachim, Humphreys, Gavin, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John C.
2005.
Fluviicola taffensis gen. nov., sp nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'.
International Journal of Systematic and Evolutionary Microbiology
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2005.
Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.
Nature
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Banning, Natasha C., Brock, Fiona, Fry, John Christopher, Parkes, Ronald John, Hornibrook, Edward R. C. and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2005.
Investigation of the methanogen population structure and activity in a brackish lake sediment.
Environmental Microbiology
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Payne, George William, Vandamme, Peter, Morgan, Sara H., LiPuma, John J., Coenye, Tom, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Jones, Thomas Hefin ORCID: https://orcid.org/0000-0002-7874-3627 and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790
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Development of a recA gene-based identification approach for the entire Burkholderia genus.
Applied and Environmental Microbiology
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10.1128/AEM.71.7.3917-3927.2005
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Kim, G. T., Hyun, M. S., Chang, I. S., Kim, H. J., Park, H. S., Kim, B. H., Kim, S. D., Wimpenny, Julian and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2005.
Dissimilatory Fe(III) reduction by an electrochemically active lactic acid bacterium phylogenetically related to Enterococcus gallinarum isolated from submerged soil.
Journal of Applied Microbiology
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10.1111/j.1365-2672.2004.02514.x
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Wade, W. G., Munson, M. A., de Lillo, A. and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2005.
Specificity of the oral microflora in dentinal caries, endodontic infections and periodontitis.
International Congress Series
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Ahn, Yeonghee, Park, Eun-Jung, Oh, You-Kwan, Park, Sunghoon, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835 and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
2005.
Biofilm microbial community of a thermophilic trickling biofilter used for continuous biohydrogen production.
FEMS Microbiology Letters
249
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10.1016/j.femsle.2005.05.050
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Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments.
Applied and Environmental Microbiology
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10.1128/AEM.70.9.5708-5713.2004
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Newberry, Carole J., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry Andrew, Parkes, Ronald John, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher
2004.
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190.
Environmental Microbiology
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O'Sullivan, Louise A., Fuller, Katherine E., Thomas, Ellen M., Turley, Carol M., Fry, John C. and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209
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Distribution and culturability of the uncultivated 'AGG58 cluster' of Bacteroidetes phylum in aquatic environments.
FEMS Microbiology Ecology
47
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10.1016/S0168-6496(03)00300-3
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Ellis, Richard John, Morgan, Philip, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher
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Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil.
Applied and Environmental Microbiology
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