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Lechon, Tamara ORCID: https://orcid.org/0000-0002-5163-5132, Kent, Nicholas A., Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 and Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X 2025. Regulation of meristem and hormone function revealed through analysis of directly-regulated SHOOT MERISTEMLESS target genes. Scientific Reports 15 (1) , 240. 10.1038/s41598-024-83985-1
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Nan, Xinsheng ORCID: https://orcid.org/0000-0002-0865-7934, Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186, Hoehn, Sven, Dighe, Shrinivas Nivrutti ORCID: https://orcid.org/0000-0002-2826-8733, Ukeri, John, Pease, Darius F., Griffin, Joshua, Warrington, Jessica I., Saud, Zack, Hottinger, Emma, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Jones, Davey, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209, Stanton, Richard ORCID: https://orcid.org/0000-0002-6799-1182, Castell, Oliver K. ORCID: https://orcid.org/0000-0002-6059-8062, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 and Jurkowski, Tomasz P. ORCID: https://orcid.org/0000-0002-2012-0240 2023. VarLOCK: sequencing-independent, rapid detection of SARS-CoV-2 variants of concern for point-of-care testing, qPCR pipelines and national wastewater surveillance. Scientific Reports 13 (1) , 20832. 10.1038/s41598-023-47289-0
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Williamson, Daniel, Tasker-Brown, William, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Jones, Angharad ORCID: https://orcid.org/0000-0001-7493-9625 and Band, Leah R. 2023. Modelling how plant cell-cycle progression leads to cell size regulation. PLoS Computational Biology 10.1371/journal.pcbi.1011503
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Nan, X., Hoehn, S., Hardinge, P. ORCID: https://orcid.org/0000-0002-6292-5186, Dinghe, S. N., Ukeri, John, Pease, D., Griffin, J., Warrington, J. I., Saud, Z., Hottinger, E., Webster, G. ORCID: https://orcid.org/0000-0002-9530-7835, Jones, D., Kille, P. ORCID: https://orcid.org/0000-0001-6023-5221, Weightman, A. ORCID: https://orcid.org/0000-0002-6671-2209, Stanton, R. ORCID: https://orcid.org/0000-0002-6799-1182, Castell, O. K. ORCID: https://orcid.org/0000-0002-6059-8062, Murray, J. A. H. ORCID: https://orcid.org/0000-0002-2282-3839 and Jurkowski, T. P. ORCID: https://orcid.org/0000-0002-2012-0240 2022. VarLOCK - sequencing independent, rapid detection of SARS-CoV-2 variants of concern for point-of-care testing, qPCR pipelines and national wastewater surveillance. [Online]. medRxix: Available at: https://www.medrxiv.org/content/10.1101/2022.01.06...
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Jathoul, Amit P. ORCID: https://orcid.org/0000-0002-6767-7775, Branchini, Bruce R., Anderson, James C. and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2022. A higher spectral range of beetle bioluminescence with infraluciferin. Frontiers in Bioengineering and Biotechnology 10 , 897272. 10.3389/fbioe.2022.897272
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Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Kim, Hak Joong, Zhao, Jinlian, Petrova, Yoana D., Ramming, Christina E., Jenner, Matthew, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Hertweck, Christian, Challis, Gregory L., Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 and Cooper, Vaughn S. 2021. Discovery of the pseudomonas polyyne protegencin by a phylogeny-guided study of polyyne biosynthetic gene cluster diversity. mBio 12 (4) , e00715-21. 10.1128/mBio.00715-21
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Parry, Geraint, Benitez-Alfonso, Yoselin, Gibbs, Daniel J, Grant, Murray, Harper, Andrea, Harrison, C Jill, Kaiserli, Eirini, Leonelli, Sabina, May, Sean, McKim, Sarah, Spoel, Steven, Turnbull, Colin, van der Hoom, Renier A L and Murray, James ORCID: https://orcid.org/0000-0002-2282-3839 2020. How to build an effective research network: lessons from two decades of the GARNet plant science community. Journal of Experimental Botany 71 (22) , pp. 6881-6889. 10.1093/jxb/eraa397
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Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186, Baxani, Divesh K., McCloy, Thomas, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 and Castell, Oliver K. ORCID: https://orcid.org/0000-0002-6059-8062 2020. Bioluminescent detection of isothermal DNA amplification in microfluidic generated droplets and artificial cells. Scientific Reports 10 (1) , 21886. 10.1038/s41598-020-78996-7
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Rojas, Oswaldo, Forero, Manuel G., Menendez, Jose M., Jones, Angharad ORCID: https://orcid.org/0000-0001-7493-9625, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2020. Segmentation of meristem cells by an automated opinion algorithm. Journal of Applied Sciences 10 (23) , 8523. 10.39390/app10238523
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Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Bull, Matthew, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Parkhill, Julian, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Challis, Gregory L. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2020. Genomic assemblies of members of Burkholderia and related genera as a resource for natural product discovery. Microbiology Resource Announcements 9 , e00485-20. 10.1128/MRA.00485-20
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Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2020. Full dynamic range quantification using loop-mediated amplification (LAMP) by combining analysis of amplification timing and variance between replicates at low copy number. Scientific Reports 10 , 916. 10.1038/s41598-020-57473-1
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Jones, Angharad R. ORCID: https://orcid.org/0000-0001-7493-9625, Band, Leah R. and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2019. Double or nothing? Cell division and cell size control. Trends in Plant Science 24 (12) , pp. 1083-1093. 10.1016/j.tplants.2019.09.005
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Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2019. Lack of specificity associated with using molecular beacons in loop mediated amplification assays. BMC Biotechnology 19 , 55. 10.1186/s12896-019-0549-z
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Mullins, Alex J. ORCID: https://orcid.org/0000-0001-5804-9008, Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839, Bull, Matthew J., Jenner, Matthew, Jones, Cerith ORCID: https://orcid.org/0000-0001-6275-0235, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Green, Angharad E., Neill, Daniel R., Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504, Parkhill, Julian, Challis, Gregory L. and Mahenthiralingam, Eshwar ORCID: https://orcid.org/0000-0001-9014-3790 2019. Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria. Nature Microbiology 4 , pp. 996-1005. 10.1038/s41564-019-0383-z
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Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2019. Reduced false positives and improved reporting of loop-mediated isothermal amplification using quenched fluorescent primers. Scientific Reports 9 , 7400. 10.1038/s41598-019-43817-z
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Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186, Kiddle, Guy, Tisi, Laurence and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2018. Optimised LAMP allows single copy detection of 35Sp and NOSt in transgenic maize using Bioluminescent Assay in Real Time (BART). Scientific Reports 8 , 17590. 10.1038/s41598-018-36207-4
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Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Murison, Alexander, Jones, Angharad ORCID: https://orcid.org/0000-0001-7493-9625, Fozard, John, Aida, Mitsuhiro, Band, Leah R., Bennett, Malcolm and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2018. Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network. Development 145 (9) , dev157081. 10.1242/dev.157081
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Halliwell, Lisa M., Jathoul, Amit P. ORCID: https://orcid.org/0000-0002-6767-7775, Bate, Jack P., Worthy, Harley L., Anderson, James C., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2018. ΔFlucs: brighter photinus pyralis firefly luciferases identified by surveying consecutive single amino acid deletion mutations in a thermostable variant. Biotechnology and Bioengineering 115 (1) , pp. 50-59. 10.1002/bit.26451
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Joanna, Friesner, Sarah, Assmann, Bastow, Ruth, Julia, Bailey-Serres, Jim, Beynon, Volker, Brendel, Robin, Buell, Alexander, Buksch, Wolfgang, Busch, Taku, Demura, R, Dinneny Jose, J, Doherty Colleen, L, Eveland Andrea, Pascal, Falter-Braun, A, Gehan Malia, Michael, Gonzales, Erich, Grotewold, Rodrigo, Gutierrez, Ute, Kramer, Gabriel, Krouk, Shisong, Ma, RJ, Cody Markelz, Molly, Megraw, C, Meyers Blake, Murray, James ORCID: https://orcid.org/0000-0002-2282-3839, J, Provart Nicholas, Sue, Rhee, Roger, Smith, Edgar, Spalding, Crispin, Taylor, Tracy, Teal, U, Torii Keiko, Chris, Town, Matthew, Vaughn, Richard, Vierstra, Doreen, Ware, Olivia, Wilkins, Cranos, Williams and M, Brady Siobhan 2017. The next generation of training for arabidopsis researchers: Bioinformatics and Quantitative Biology. Plant Physiology 175 , pp. 1499-1509. 10.1104/pp.17.01490
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Pass, Daniel Antony ORCID: https://orcid.org/0000-0003-2799-8432, Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Marchbank, Angela, Crawford, Margaret R., Paszkiewicz, Konrad, Kent, Nicholas A. ORCID: https://orcid.org/0000-0002-4114-1307 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2017. Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis. PLoS Genetics 13 (9) , e1006988. 10.1371/journal.pgen.1006988
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Jones, Angharad R. ORCID: https://orcid.org/0000-0001-7493-9625, Forero-Vargas, Manuel, Withers, Simon P., Smith, Richard S., Traas, Jan, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2017. Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size. Nature Communications 8 , 15060. 10.1038/ncomms15060
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Anderson, James C., Grounds, Helen, Jathoul, Amit ORCID: https://orcid.org/0000-0002-6767-7775, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Pacman, Steven J. and Tisi, Laurence 2016. Convergent synthesis and optical properties of near-infrared emitting bioluminescent infra-luciferins. RSC Advances 7 (7) , pp. 3975-3982. 10.1039/C6RA19541E
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Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2016. Seed size plasticity in response to embryonic lethality conferred by ectopic CYD activation is dependent on plant architecture. Plant Signaling & Behaviour 11 (7) , e1192741. 10.1080/15592324.2016.1192741
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Nieuwland, Jeroen, Stamm, Petra, Wen, Bo, Randall, Ricardo S., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Bassel, George W. 2016. Re-induction of the cell cycle in the Arabidopsis post-embryonic root meristem is ABA-insensitive, GA-dependent and repressed by KRP6. Scientific Reports 6 , 23586. 10.1038/srep23586
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Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Forzani, Celine, Forero-Vargas, Manuel, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2015. Activation of CYCD7;1 in the central cell and early endosperm overcomes cell-cycle arrest in the Arabidopsis female gametophyte, and promotes early endosperm and embryo development. Plant Journal 84 (1) , pp. 41-55. 10.1111/tpj.12957
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Randall, Ricardo ORCID: https://orcid.org/0000-0002-2778-519X, Miyashima, Shunsuke, Blomster, Tiina, Zhang, Jing, Elo, Annakaisa, Karlberg, Anna, Immanen, Juha, Nieminen, Kaisa, Lee, Ji-Young, Kakimoto, Tatsuo, Blajecka, Karolina, Melnyk, Charles W., Alcasbas, Annette, Forzani, Celine, Matsumoto-Kitano, Miho, Mähönen, Ari Pekka, Bhalerao, Rishikesh, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Helariutta, Ykä and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2015. AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins. Biology Open 4 , pp. 1229-1236. 10.1242/bio.013128
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Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian, Smith, Alison, Hibberd, Julian, Webb, Alex A. R., Locke, James, Schornack, Sebastian, Ajioka, Jim, Baulcombe, David C., Zipfel, Cyril, Kamoun, Sophien, Jones, Jonathan D. G., Kuhn, Hannah, Robatzek, Silke, Van Esse, H. Peter, Sanders, Dale, Oldroyd, Giles, Martin, Cathie, Field, Rob, O'Connor, Sarah, Fox, Samantha, Wulff, Brande, Miller, Ben, Breakspear, Andy, Radhakrishnan, Guru, Delaux, Pierre-Marc, Loqué, Dominique, Granell, Antonio, Tissier, Alain, Shih, Patrick, Brutnell, Thomas P., Quick, W. Paul, Rischer, Heiko, Fraser, Paul D., Aharoni, Asaph, Raines, Christine, South, Paul F., Ané, Jean-Michel, Hamberger, Björn R., Langdale, Jane, Stougaard, Jens, Bouwmeester, Harro, Udvardi, Michael, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Ntoukakis, Vardis, Schäfer, Patrick, Denby, Katherine, Edwards, Keith J., Osbourn, Anne and Haseloff, Jim 2015. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist 208 (1) , pp. 13-19. 10.1111/nph.13532
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Randall, Ricardo ORCID: https://orcid.org/0000-0002-2778-519X, Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2015. AINTEGUMENTA and the D-type cyclin CYCD3;1 independently contribute to petal size control in Arabidopsis: evidence for organ size compensation being an emergent rather than a determined property. Journal of Experimental Botany 66 (13) , pp. 3991-4000. 10.1093/jxb/erv200
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Galletti, Roberta, Johnson, Kim L., Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, San-Bento, Rita, Watt, Andrea M., Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 and Ingram, Gwyneth C. 2015. DEFECTIVE KERNEL 1 promotes and maintains plant epidermal differentiation. Development 142 (11) , pp. 1978-1983. 10.1242/dev.122325
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Forzani, Celine, Aichinger, Ernst, Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Willemsen, Viola, Laux, Thomas, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2014. WOX5 suppresses CYCLIN D activity to establish quiescence at the center of the root stem cell niche. Current Biology 24 (16) , pp. 1939-1944. 10.1016/j.cub.2014.07.019
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Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Jones, Angharad ORCID: https://orcid.org/0000-0001-7493-9625 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2014. The plant cell cycle in context. Journal of Experimental Botany 65 (10) , pp. 2557-2562. 10.1093/jxb/eru188
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Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2014. STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1. Plant Signaling and Behavior 9 (6) , e28934. 10.4161/psb.28934
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Patzewitz, Eva-Maria, Salcedo-Sora, J. Enrique, Wong, Eleanor H., Sethia, Sonal, Stocks, Paul A., Maughan, Spencer C., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Krishna, Sanjeev, Bray, Patrick G., Ward, Stephen A. and Müller, Sylke 2013. Glutathione transport: A new role for PfCRT in chloroquine resistance. Antioxidants & Redox Signaling 19 (7) , pp. 683-695. 10.1089/ars.2012.4625

Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Nieuwland, Jeroen and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2013. The Arabidopsis homeobox gene SHOOT MERISTEMLESS has cellular and meristem-organisational roles with differential requirements for cytokinin and CYCD3 activity. The Plant Journal 75 (1) , pp. 53-66. 10.1111/tpj.12198

Wen, Bo, Nieuwland, Jeroen and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2013. The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication. Journal of Experimental Botany 64 (4) , pp. 1-13. 10.1093/jxb/ert009

Nieuwland, Jeroen, Sornay, Emily ORCID: https://orcid.org/0000-0003-0720-2660, Marchbank, Angela Maureen, De Graaf, Barend H. J. ORCID: https://orcid.org/0000-0003-0542-5510 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2012. Phytotracker, an information management system for easy recording and tracking of plants, seeds and plasmids. Plant Methods 8 , 43. 10.1186/1746-4811-8-43
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Cruz-Ramirez, Alfredo, Diaz-Trivino, Sara, Blilou, Ikram, Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301, Sozzani, Rosangela, Zamioudis, Christos, Miskolczi, Pal, Nieuwland, Jeroen, Benjamins, Rene, Dhonukshe, Pankaj, Caballero-Perez, Juan, Horvath, Beatrix, Long, Yuchen, Mahonen, Ari Pekka, Zhang, Hongtao, Xu, Jian, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Benfey, Philip N., Bako, Laszlo, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Scheres, Ben ORCID: https://orcid.org/0000-0001-5400-9578 2012. A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150 (5) , pp. 1002-1015. 10.1016/j.cell.2012.07.017

Collins, Carl, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2012. D-type cyclins control cell division and developmental rate during Arabidopsis seed development. Journal of Experimental Botany 63 (10) , pp. 3571-3586. 10.1093/jxb/ers015

Kiddle, Guy, Hardinge, Patrick ORCID: https://orcid.org/0000-0002-6292-5186, Buttigieg, Neil, Gandelman, Olga, Pereira, Clint, McElgunn, Cathal J., Rizzoli, Manuela, Jackson, Rebecca, Appleton, Nigel, Moore, Cathy, Tisi, Laurence C. and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2012. GMO detection using a bioluminescent real time reporter (BART) of loop mediated isothermal amplification (LAMP) suitable for field use. BMC Biotechnology 12 , 15. 10.1186/1472-6750-12-15
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Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Jones, Angharad R. ORCID: https://orcid.org/0000-0001-7493-9625, Godin, C. and Traas, J. 2012. Systems analysis of shoot apical meristem growth and development: integrating hormonal and mechanical signaling. The Plant Cell 24 (10) , pp. 3907-3919. 10.1105/tpc.112.102194

Sanz, Luis, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Forzani, Celine, Patell, F., Nieuwland, Jereon, Wen, Bo, Quelhas, Pedro, De Jager, S., Titmus, Craig, Campilho, A., Ren, H., Estelle, M., Wang, H. and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2011. The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation. The Plant Cell 23 (2) , pp. 641-660. 10.1105/tpc.110.080002

Quelhas, Pedro, Nieuwland, Jeroen, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Mendonça, Ana Maria, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Campilho, Aurélio 2011. Arabidopsis Thaliana automatic cell file detection and cell length estimation. Lecture Notes on Computer Science 6754 , pp. 1-11. 10.1007/978-3-642-21596-4_1

Gandelman, O. A., Kiddle, G., McElgunn, C.J., Rizzoli, M., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Tisi, L. C. 2011. BART: Smart biochemistry, bright bioluminescence, low cost hardware. Presented at: 15th International Symposium on Bioluminescence and Chemiluminescence- Light Emission: Biology and Scientific Applications, Shanghai, China, 13-17 May 2008. Published in: Shen, X., Yang, X., Zhang, X., Cui, Z., Kricka, L. and Stanley, P. eds. Bioluminescence and Chemiluminescence- Light Emission: Biology and Scientific Applications, Proceedings of the 15th International Symposium, Shanghai, P R China, 13 – 17 May 2008. New Jersey: World Scientific Publishing, pp. 93-96. 10.1142/9789812839589_0021

Umbrasaite, Julija, Schweighofer, Alois, Kazanaviciute, Vaiva, Magyar, Zoltan, Ayatollahi, Zahra, Unterwurzacher, Verena, Choopayak, Chonnanit, Boniecka, Justyna, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Bogre, Laszlo and Meskiene, Irute 2010. MAPK phosphatase AP2C3 induces ectopic proliferation of epidermal cells leading to stomata development in Arabidopsis. PLoS ONE 5 (12) , e15357. 10.1371/journal.pone.0015357
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Gandelman, Olga, Church, Vicki, Moore, Cathy, Kiddle, Guy, Carne, Christopher, Parmar, Surendra, Jalal, Hamid, Tisi, Laurence and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2010. Novel bioluminescent quantitative detection of nucleic acid amplification in real-time. PLoS ONE 5 (11) , e14155. 10.1371/journal.pone.0014155
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Xie, Z., Lee, E., Lucas, J. R., Morohashi, K., Li, D., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Sack, F. D. and Grotewold, E. 2010. Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes. The Plant Cell 22 (7) , pp. 2306-2321. 10.1105/tpc.110.074609

Lee, Tae-Jin, Pascuzzi, Pete, Settlage, Sharon, Shultz, Randall, Tanurdzic, Milos, Rabinowicz, Pablo, Menges, Margit, Zheng, Ping, Main, Dorrie, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Sosinski, Bryon, Allen, George, Martienssen, Robert, Hanley-Bowdoin, Linda, Vaughn, Matthew and Thompson, William 2010. Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genetics 6 (6) , e1000982. 10.1371/journal.pgen.1000982
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Maughan, S. C., Pasternak, M., Cairns, N., Kiddle, G., Brach, T., Jarvis, R., Haas, F., Nieuwland, J., Lim, B., Salcedo-Sora, E., Kruse, C., Orsel, M., Hell, R., Miller, A. J., Bray, P., Foyer, C. H., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Meyer, A. J. and Cobbett, C. .S 2010. Plant homologs of the Plasmodium falciparum chloroquine-resistance transporter, PfCRT, are required for glutathione homeostasis and stress responses. Proceedings of the National Academy of Sciences of the United States of America 107 (5) , pp. 2331-2336. 10.1073/pnas.0913689107

Sozzani, R., Cui, H., Moreno-Risueno, M. A., Busch, W., Van Norman, J. M., Vernoux, T., Brady, S. M., Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Benfey, P. N. 2010. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. Nature 466 (7302) , pp. 128-132. 10.1038/nature09143

Nieuwland, Jeroen, Maughan, S., Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Sanz, L. and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2009. The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region. Proceedings of the National Academy of Sciences of the United States of America 106 (52) , pp. 22528-22533. 10.1073/pnas.0906354106

Nieuwland, Jereon, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2009. Control of division and differentiation of plant stem cells and their derivatives. Seminars in Cell and Developmental Biology 20 (9) , pp. 1134-1142. 10.1016/j.semcdb.2009.09.011

Menges, M., Doczi, R., Okresz, L., Morandini, P., Mizzi, L., Soloviev, M., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Bogre, L. 2009. Comprehensive gene expression atlas for the Arabidopsis MAP kinase signalling pathways. New Phytologist 179 (3) , pp. 643-662. 10.1111/j.1469-8137.2008.02552.x

Tromas, Alexandre, Braun, Nils, Muller, Philippe, Khodus, Tatyana, Paponov, Ivan A., Palme, Klaus, Ljung, Karin, Lee, Ji-Young, Benfey, Philip, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Scheres, Ben ORCID: https://orcid.org/0000-0001-5400-9578 and Perrot-Rechenmann, Catherine 2009. The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth. PLoS ONE 4 (9) , e6648. 10.1371/journal.pone.0006648
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De Jager, Sarah M., Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Huntley, Rachael P., Robinson, Alastair S., Den Boerr, Bart G. W. and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2009. Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1 E2Fa and E2Fc. Plant Molecular Biology 71 (4-5) , pp. 345-365. 10.1007/s11103-009-9527-5

Gandelman, O. A., Kiddle, G., McElgunn, C. J., Rizzoli, M., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Tisi, L. C 2009. BART applications in medical and food diagnostics. Presented at: International Symposium on Bioluminescence and Chemiluminescence, Shanghai, China, 13 – 17 May 2008. Published in: Shen, X., Yang, X., Zhang, X., Cui, Z., Kricka, L. and Stanley, P. eds. Proceedings of the 15th International Symposium on Bioluminescence and Chemiluminescence : light emission : biology and scientific applications. Hackensack, NJ: World Scientific Publishing, pp. 97-100. 10.1142/9789812839589_0022

Sanz, L., Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Law, E. and Murray, James August Henry ORCID: https://orcid.org/0000-0002-2282-3839 2008. Stem cell maintenance and reactivation in lateral root initiation [Abstract]. FEBS Journal 275 (S1) , p. 429. 10.1111/j.1742-4658.2008.06448.x

Menges, M. and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2008. Plant D-type cyclins: structure,roles and function. Bryant, J. A. and Francis, D., eds. The Eukaryotic Cell Cycle, Experimental Biology Reviews, vol. 59. Abingdon: Taylor & Francis, pp. 1-28.

Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2008. A model for Arabidopsis class-1 KNOX gene function. Plant Signaling and Behavior 3 (4) , pp. 257-259. 10.1111/j.1365-313X.2007.03095.x

Ren, H., Santner, A., Pozo, J. C .D., Murray, James August Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Estelle, M. 2008. Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases. Plant Journal 53 (5) , pp. 705-716. 10.1111/j.1365-313X.2007.03370.x

Lopez-Juez, E., Dillon, E., Magyar, A., Khan, S., Hazeldine, S., De Jager, S., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Beemster, G., Bogre, L. and Shanahan, H. 2008. Distinct light-mediated gene expression and cell cycle programs in the shoot apex and cotyledons. Plant Cell 20 (4) , pp. 947-68. 10.1105/tpc.107.057075

Paponov, I. A, Paponov, M., Teale, W ., Menges, M ., Chakrabortee, S., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Palme, K. 2008. Comprehensive transcriptome analysis of auxin responses in Arabidopsis. Molecular Plant 1 (2) , pp. 321-337. 10.1093/mp/ssm021

Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2007. The KNOX gene SHOOT MERISTEMLESS is required for the development of reproductive meristematic tissues in Arabidopsis. The Plant Journal 50 (5) , pp. 767-781. 10.1111/j.1365-313X.2007.03095.x

Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Alcasabas, A. A., Maughan, S. C., Menges, M., Braun, N., Collins, C., Nieuwland, Jeroen, Prinsen, E., Sundaresan, V. and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2007. Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses. Proceedings of the National Academy of Sciences of the United States of America 104 (36) , pp. 14537-14542. 10.1073/pnas.0704166104

Jathoul, Amit ORCID: https://orcid.org/0000-0002-6767-7775, Gandelman, O. A., Law, G. H. E., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Tisi, L. C. 2007. Designing enhanced thermostable luciferase for proteolytic assay. Szalay, Aladar A., Hill, Philip J., Kricka, Larry J. and Stanley, Philip E., eds. Bioluminescence and Chemiluminescence: Chemistry, Biology and Applications, Hackensack, NJ: World Scientific, pp. 107-110. (10.1142/9789812770196_0026)

Gandelman, O. A., Church, V. L., Moore, C. A., Carne, C., Jalal, H., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Tisi, L. C. 2007. BART - Bioluminescent Alternative To real-time PCR. Presented at: 14th International Symposium on Bioluminescence and Chemiluminescence : chemistry, biology and applications, San Diego, USA, 15-19 October 2006. Published in: Szalay, Aladar A., Hill, Philip J., Kricka, Larry J. and Stanley, Philip E. eds. Proceedings of the 14th International Symposium on Bioluminescence and Chemiluminescence : chemistry, biology and applications, San Diego USA 15-19 October 2006. BIOLUMINESCENCE AND CHEMILUMINESCENCE: CHEMISTRY, BIOLOGY AND APPLICATIONS. Hackensack, NJ: World Scientific, pp. 95-98.

Gandelman, O., Church, V. L., Moore, C., Carne, C., Jalal, H., Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 and Tisi, L. C. 2006. Bioluminescent alternative to real-time PCR (BART) [abstract]. Luminescence -Chichester- 21 (5) , pp. 276-277.

Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2006. KNOX gene function in plant stem cell niches. Plant Molecular Biology 60 (6) , pp. 929-946. 10.1007/s11103-005-4478-y

Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2006. The evolving concept of the Meristem. Plant Molecular Biology 60 (6) , V-VII. 10.1007/s11103-006-0061-4

Masubelele, N. H., Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Menges, M., Maughan, S., Collins, C., Huntley, R., Nieuwland, Jeroen, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2005. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 102 (43) , pp. 15694-15699. 10.1073/pnas.0507581102

Jager, S., Maughan, S., Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2005. The developmental context of cell-cycle control in plants. Seminars in Cell and Developmental Biology 16 (3) , pp. 385-396. 10.1016/j.semcdb.2005.02.004

Dewitte, Walter ORCID: https://orcid.org/0000-0002-0606-1686, Riou-Khamlichi, Catherine, Scofield, Simon ORCID: https://orcid.org/0000-0001-5466-314X, Healy, J. M. Sandra, Jacqmard, Annie, Kilby, Nigel J. and Murray, James A. H. ORCID: https://orcid.org/0000-0002-2282-3839 2002. Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3. The Plant Cell 15 (1) , pp. 79-92. 10.1105/tpc.004838

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