González Requena, Víctor, Srivastava, Prabhakar L. ORCID: https://orcid.org/0000-0002-8219-6419, Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2024.
Single point mutation abolishes water capture in germacradien‐4‐ol synthase.
ChemBioChem
25
(23)
, e202400290.
10.1002/cbic.202400290
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Srivastava, Prabhakar L. ORCID: https://orcid.org/0000-0002-8219-6419, Johns, Sam T., Voice, Angus, Morley, Katharine, Escorcia, Andrés M., Miller, David J., Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830 and van der Kamp, Marc W.
2024.
Simulation-guided engineering enables a functional switch in selinadiene synthase toward hydroxylation.
ACS Catalysis
14
(14)
, 11034–11043.
10.1021/acscatal.4c02032
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Srivastava, Prabhakar L. ORCID: https://orcid.org/0000-0002-8219-6419, Johnson, Luke A. ORCID: https://orcid.org/0000-0002-6697-6589, Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2024.
Production of non-natural terpenoids through chemoenzymatic synthesis using substrate analogs.
Rudolf, J., ed.
Methods in Enzymology,
Elsevier,
pp. 207-230.
(10.1016/bs.mie.2024.03.015)
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Srivastava, PrabhakarL. ORCID: https://orcid.org/0000-0002-8219-6419, Johns, Sam T., Walters, Rebecca, Miller, David J., Van der Kamp, Marc W. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2023.
Active site loop engineering abolishes water capture in hydroxylating sesquiterpene synthases.
ACS Catalysis
13
(21)
, pp. 14199-14204.
10.1021/acscatal.3c03920
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Srivastava, Prabhakar L. ORCID: https://orcid.org/0000-0002-8219-6419, Escorcia, Andrés M., Huynh, Florence, Miller, David J., Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830 and van der Kamp, Marc W.
2021.
Redesigning the molecular choreography to prevent hydroxylation in Germacradien-11-ol synthase catalysis.
ACS Catalysis
11
(3)
, 1033–1041.
10.1021/acscatal.0c04647
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Cresser-Brown, Joel, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Jin, Yi ORCID: https://orcid.org/0000-0002-6927-4371, Roth, Christian, Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2020.
An unexpected co-crystal structure of the calpain PEF(S) domain with Hfq reveals a potential chaperone function of Hfq.
Acta Crystallographica Section F: Structural Biology Communications
76
(2)
, pp. 81-85.
10.1107/S2053230X20001181
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Demiray, Melodi, Miller, David J and Allemann, Rudolf K ORCID: https://orcid.org/0000-0002-1323-8830
2019.
Harnessing enzyme plasticity for the synthesis of oxygenated sesquiterpenoids.
Beilstein Journal of Organic Chemistry
15
, pp. 2184-2190.
10.3762/bjoc.15.215
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Loizzi, Marianna, Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2019.
Silent catalytic promiscuity in the high-fidelity
terpene cyclase δ-cadinene synthase.
Organic & Biomolecular Chemistry
17
(5)
, pp. 1206-1214.
10.1039/C8OB02821D
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Kalash, Leen, Cresser-Brown, Joel, Habchi, Johnny, Morgan, Connor, Miller, David J., Glen, Robert C., Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830 and Bender, Andreas
2018.
Structure-based design of allosteric calpain-1 inhibitors populating a novel bioactivity space.
European Journal of Medicinal Chemistry
157
, pp. 1264-1275.
10.1016/j.ejmech.2018.08.049
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Huynh, Florence, Grundy, Daniel J., Jenkins, Robert L., Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2018.
Sesquiterpene synthase-catalysed formation of a new medium-sized cyclic terpenoid ether from farnesyl diphosphate analogues.
Chembiochem
19
(17)
, pp. 1834-1838.
10.1002/cbic.201800218
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Loizzi, Marianna, Gonzalez Gonzalez, Veronica, Miller, David J. and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2018.
Nucleophilic water capture or proton loss: single amino acid switch converts δ-Cadinene synthase into germacradien-4-ol synthase.
Chembiochem
19
(1)
, pp. 100-105.
10.1002/cbic.201700531
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Yaldizli, Özgür, Sethi, Varun, Pardini, Matteo, Tur, Carmen, Mok, Kin Y., Muhlert, Nils ORCID: https://orcid.org/0000-0002-6414-5589, Liu, Zheng, Samson, Rebecca S., Wheeler-Kingshott, Claudia A.M., Yousry, Tarek A., Houlden, Henry, Hardy, John, Miller, David H. and Chard, Declan T.
2018.
Response to the commentary of Yates RL and DeLuca GC on the study: HLA-DRB1*1501 associations with magnetic resonance imaging measures of grey matter pathology in multiple sclerosis.
Multiple Sclerosis and Related Disorders
19
, pp. 168-170.
10.1016/j.msard.2016.08.006
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Adams, S.E., Robinson, E.J., Miller, David James, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Hallett, Maurice Bartlett ORCID: https://orcid.org/0000-0001-8197-834X and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2015.
Conformationally restricted calpain inhibitors.
Chemical Science
6
(12)
, pp. 6865-6871.
10.1039/c5sc01158b
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Touchet, Sabrina, Chamberlain, Keith, Woodcock, Christine M., Miller, David J., Birkett, Michael A., Pickett, John A. ORCID: https://orcid.org/0000-0002-1008-6595 and Allemann, Rudolf K. ORCID: https://orcid.org/0000-0002-1323-8830
2015.
Novel olfactory ligands via terpene synthases.
Chemical Communications
51
(35)
, pp. 7550-7553.
10.1039/C5CC01814E
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Adams, Sarah Elizabeth, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Miller, David James, Robinson, Emma J., Hallett, Maurice Bartlett ORCID: https://orcid.org/0000-0001-8197-834X and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2014.
The structural basis of differential inhibition of human calpain by indole and phenyl α--mercaptoacrylic acids.
Journal of Structural Biology
187
(3)
, pp. 236-241.
10.1016/j.jsb.2014.07.004
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Miller, David James, Adams, Sarah Elizabeth, Hallett, Maurice Bartlett ORCID: https://orcid.org/0000-0001-8197-834X and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2013.
Calpain-1 inhibitors for selective treatment of rheumatoid arthritis: what is the future?
Future Medicinal Chemistry
5
(17)
, pp. 2057-2074.
10.4155/fmc.13.172
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Li, Jian‑Xu, Fang, Xin, Zhao, Qin, Ruan, Ju-Xin, Yang, Chang‑Qing, Wang, Ling‑Jian, Miller, David James, Faraldos, Juan A., Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830, Chen, Xiao‑Ya and Zhang, Peng
2013.
Rational engineering of plasticity residues of sesquiterpene synthases from Artemisia annua: product specificity and catalytic efficiency.
Biochemical Journal -London-
451
(3)
, pp. 417-426.
10.1042/BJ20130041
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Li, Jian-Xu, Fang, Xin, Zhao, Qin, Ruan, Ju-Xin, Yang, Chang-Qing, Wang, Ling-Jian, Miller, David James, Faraldos, Juan A., Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830, Chen, Xiao-Ya and Zhang, Peng
2013.
Rational engineering of plasticity residues of sesquiterpene synthases from 'Artemisia annua': Product specificity and catalytic efficiency.
Biochemical Journal
451
(3)
, pp. 417-426.
10.1042/BJ20130041
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Cascón, Oscar, Touchet, Sabrina, Miller, David James, Gonzalez, Veronica, Faraldos, Juan A. and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2012.
Chemoenzymatic preparation of germacrene analogues.
Chemical Communications
48
(78)
, pp. 9702-9704.
10.1039/c2cc35542f
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Yoosuf-Aly, Zulfa, Faraldos, Juan A., Miller, David James and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2012.
Chemoenzymatic synthesis of the alarm pheromone (+)-verbenone from geranyl diphosphate.
Chemical Communications
48
, pp. 7040-7042.
10.1039/c2cc32883f
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Adams, Sarah Elizabeth, Parr, Christian, Miller, David James, Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830 and Hallett, Maurice Bartlett ORCID: https://orcid.org/0000-0001-8197-834X
2012.
Potent inhibition of Ca2+-dependent activation of calpain-1 by novel mercaptoacrylates.
MedChemComm
3
(5)
, pp. 566-570.
10.1039/c2md00280a
|
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Faraldos, Juan A., Miller, David James, Gonzalez, Veronica, Yoosuf-Aly, Fathima Zulfa, Cascón, Oscar, Li, Amang and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2012.
A 1,6-ring closure mechanism for (+)-δ-cadinene synthase?
Journal of the American Chemical Society
134
(13)
, pp. 5900-5908.
10.1021/ja211820p
|
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Miller, David James and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2012.
Sesquiterpene synthases: Passive catalysts or active players?
Natural Product Reports
29
(1)
, pp. 60-71.
10.1039/c1np00060h
|
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Gennadios, Heather A., Gonzalez, Veronica, Di Costanzo, Luigi, Li, Amang, Yu, Fanglei, Miller, David James, Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830 and Christianson, David W.
2009.
Crystal structure of (+)-δ-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis.
Biochemistry
48
(26)
, pp. 6175-6183.
10.1021/bi900483b
|
|
Miller, David James, Yu, Fanglei, Knight, David William and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2009.
6- and 14-Fluoro farnesyl diphosphate: mechanistic probes for the reaction catalysed by aristolochene synthase.
Organic & Biomolecular Chemistry
7
(5)
, pp. 962-975.
10.1039/b817194g
|
|
Miller, David James, Yu, Fanglei and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2008.
FLUO 14-Study of sesquiterpene cyclization reactions using fluorinated farnesyl diphosphate analogs.
Abstracts of Papers of the American Chemical Society
236
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Shishova, Ekaterina Y., Yu, Fanglei, Miller, David James, Faraldos, Juan A., Zhao, Yuxin X., Coates, Robert M., Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830, Cane, David E. and Christianson, David W.
2008.
X-ray crystallographic studies of substrate binding to aristolochene synthase suggest a metal ion binding sequence for catalysis.
Journal of Biological Chemistry
283
(22)
, pp. 15431-15439.
10.1074/jbc.M800659200
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Miller, David James, Gao, Jiali, Truhlar, D. G., Young, Neil James, Gonzalez, Veronica and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2008.
Stereochemistry of eudesmane cation formation during catalysis by aristolochene synthase from Penicillium roqueforti.
Organic & Biomolecular Chemistry
6
(13)
, pp. 2346-2354.
10.1039/b804198a
|
|
Miller, David James, Yu, Fanglei, Young, Neil J and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2007.
Competitive inhibition of aristolochene synthase by phenyl-substituted farnesyl diphosphates: evidence of active site plasticity.
Organic & Biomolecular Chemistry
5
(20)
, pp. 3287-3298.
10.1039/b713301b
|
|
Miller, David James, Yu, Fanglei and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2007.
Aristolochene synthase-catalyzed cyclization of 2-fluorofarnesyl-diphosphate to 2-fluorogermacrene A.
Chembiochem
8
(15)
, pp. 1819-1825.
10.1002/cbic.200700219
|
|
Yu, Fanglei, Miller, David James and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2007.
Probing the reaction mechanism of aristolochene synthase with 12,13-difluorofarnesyl diphosphate.
Chemical Communications- Royal Society of Chemistry
(40)
, pp. 4155-4157.
10.1039/b709562g
|
|
Nicoll, Andrew J., Miller, David James, Fütterer, Klaus, Ravelli, Raymond and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2006.
Designed high affinity Cu2+ -Binding α-Helical foldamer.
Journal of the American Chemical Society
128
(28)
, pp. 9187-9193.
10.1021/ja061513u
|
|
Miller, David James, Bashir-Uddin Surfraz, M., Akhtar, Mahmoud, Gani, David and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2004.
Removal of the phosphate group in mechanism-based inhibitors of inositol monophosphatase leads to unusual inhibitory activity.
Organic & Biomolecular Chemistry
2
(5)
, pp. 671-688.
10.1039/b312808c
|
|
Bashir-Uddin Surfraz, M., Miller, David James., Gani, David and Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830
2003.
Product-like inhibitors of inositol monophosphatase.
Tetrahedron Letters
44
(41)
, pp. 7677-7679.
10.1016/S0040-4039(03)01878-1
|
|
| Andersen, Jo-Ann M., Karodia, Nazira, Miller, David James, Stones, Duane and Gani, David 1998. Preparation and catalytic properties of resin bound binuclear rhodium tetracarboxylate complexes. Tetrahedron Letters 39 (42) , pp. 7815-7818. 10.1016/S0040-4039(98)01709-2 |
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| Stones, Duane, Miller, David James, Beaton, Martin W., Rutherford, Trevor J. and Gani, David 1998. A method for the quantification of resin loading using 19F gel phase NMR spectroscopy and a new method for benzyl ether linker cleavage in solid phase chemistry. Tetrahedron Letters 39 (27) , pp. 4875-4878. 10.1016/S0040-4039(98)00883-1 |
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| Miller, David James, Hammond, Stephen M., Anderluzzi, Daniela and Bugg, Timothy D. H. 1998. Aminoalkylphosphinate inhibitors of D-Ala-D-Ala adding enzyme. Journal of the Chemical Society, Perkin Transactions 1 (1) , pp. 131-132. 10.1039/a704097k |
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