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Number of items: 70.

Gwyther, Rebecca E. A., Côté, Sébastien, Chang-Seuk, Lee, Haosen, Miao, Ramakrishnan, Krithika, Palma, Matteo and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2024. Optimising CNT-FET biosensor design through modelling of biomolecular electrostatic gating and its application to β-lactamase detection. Nature Communications 15 , 7482. 10.1038/s41467-024-51325-6
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Grigorenko, Bella L., Khrenova, Maria, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Nemukhin, Alexander 2024. Histidine-assisted reduction of arylnitrenes upon photo-activation of phenyl azide chromophores in the GFP-like fluorescent proteins. Organic and Biomolecular Chemistry 22 , pp. 337-347. 10.1039/D3OB01450A
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Mack, Andrew H., Menzies, Georgina ORCID: https://orcid.org/0000-0002-6600-6507, Southgate, Alex, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504 and Leitner, Thomas 2023. A proofreading mutation with an allosteric effect allows a cluster of SARS-CoV-2 viruses to rapidly evolve. Molecular Biology and Evolution 40 (10) , msad209. 10.1093/molbev/msad209
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Evans, O., Singh, V., Aksakal, O., Jones, D. ORCID: https://orcid.org/0000-0001-7709-3995, Borri, P. ORCID: https://orcid.org/0000-0002-7873-3314 and Langbein, W. ORCID: https://orcid.org/0000-0001-9786-1023 2023. Low-temperature plasmonically enhanced single-molecule spectroscopy of fluorescent proteins. Presented at: The European Conference on Lasers and Electro-Optics 2023, 26-30 June 2023. 2023 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC). IEEE, 10.1109/cleo/europe-eqec57999.2023.10231465
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Ramakrishnan, Krithika, Johnson, Rachel L., Winter, Samuel D., Worthy, Harley L., Thomas, Christopher, Humer, Diana C., Spadiut, Oliver, Hindson, Sarah H., Wells, Stephen, Barratt, Andrew H., Menzies, Georgina E. ORCID: https://orcid.org/0000-0002-6600-6507, Pudney, Christopher R. and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2023. Glycosylation increases active site rigidity leading to improved enzyme stability and turnover. The FEBS Journal 290 (15) , pp. 3812-3827. 10.1111/febs.16783
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Stano, Pasquale, Altamura, Emiliano, Mavelli, Fabio, Singh, Vijai and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2023. Editorial: Fiat lux! Light-driven and light-controlled synthetic biological parts, devices, systems and processes. Frontiers in Bioengineering and Biotechnology 11 , 1201962. 10.3389/fbioe.2023.1201962
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Zitti, Athena and Jones, Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2023. Expanding the genetic code: a non-natural amino acid story. Biochemist 45 (1) , pp. 2-6. 10.1042/bio_2023_102
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Ahmed, Rochelle D., Auhim, Husam Sabah, Worthy, Harley L. and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2023. Fluorescent proteins: Crystallization, structural determination, and nonnatural amino acid incorporation. Sharma, Mayank, ed. Fluorescent Proteins: Methods and Protocols, Vol. 2564. Methods in Molecular Biology, Springer, pp. 99-119. (10.1007/978-1-0716-2667-2_5)
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Lee, Chang-Seuk, Gwyther, Rebecca E.A, Freeley, Mark, Jones, Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Palma, Matteo 2022. Fabrication and functionalisation of nanocarbon-based field-effect transistor biosensors. ChemBioChem 23 (23) , e202200282. 10.1002/cbic.202200282
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Cervantes-Salguero, K., Freeley, M., Gwyther, R. E. A., Jones, D. D. ORCID: https://orcid.org/0000-0001-7709-3995, Chavez, J. L. and Palma, M. 2022. Single molecule DNA origami nanoarrays with controlled protein orientation. Biophysics Reviews 3 (3) 10.1063/5.0099294
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Gwyther, Rebecca E. A., Nekrasov, Nikita P., Emilianov, Aleksei V., Nasibulin, Albert G., Ramakrishnan, Krithika, Bobrinetskiy, Ivan and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2022. Differential bio-optoelectronic gating of semiconducting carbon nanotubes by varying the covalent attachment residue of a green fluorescent protein. Advanced Functional Materials 32 (22) , 2112374. 10.1002/adfm.202112374
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Noby, Nehad, Johnson, Rachel L., Tyzack, Jonathan D., Embaby, Amira M., Saeed, Hesham, Hussein, Ahmed, Khattab, Sherine N., Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2022. Structure-guided engineering of a family IV cold-adapted esterase expands its substrate range. International Journal of Molecular Sciences 23 (9) , 4703. 10.3390/ijms23094703
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Noby, Nehad, Auhim, Husam Sabah, Winter, Samuel, Worthy, Harley L., Embaby, Amira M., Saeed, Hesham, Hussein, Ahmed, Pudney, Christopher R., Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369, Wells, Stephen A. and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2021. Structure and in silico simulations of a cold-active esterase reveals its prime cold-adaptation mechanism. Open Biology 11 (12) , 210182. 10.1098/rsob.210182
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Xu, Xinzhao, Bowen, Benjamin J., Gwyther, Rebecca E. A., Freeley, Mark, Grigorenko, Bella, Nemukhin, Alexander V., Eklöf-Österberg, Johnas, Moth-Poulsen, Kasper, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Palma, Matteo 2021. Tuning electrostatic gating of semiconducting carbon nanotubes by controlling protein orientation in biosensing devices. Angewandte Chemie International Edition 60 (37) , pp. 20184-20189. 10.1002/anie.202104044
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Johnson, Rachel L., Blaber, Hayley G., Evans, Tomas, Worthy, Harley L., Pope, Jacob R. ORCID: https://orcid.org/0000-0001-6478-5378 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2021. Designed artificial protein heterodimers with coupled functions constructed using bio-orthogonal chemistry. Frontiers in Chemistry 9 , 733550. 10.3389/fchem.2021.733550
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Freeley, Mark, Gwyther, Rebecca E. A., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Palma, Matteo 2021. DNA-directed assembly of carbon nanotube-protein hybrids. Biomolecules 11 (7) , 955. 10.3390/biom11070955
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Sabah Auhim, Husam, Grigorenko, Bella L, Harris, Tessa, Aksakal, Ozan, Polyakov, Igor, Berry, Colin ORCID: https://orcid.org/0000-0002-9943-548X, dos Passos Gomes, Gabriel, Alabugin, Igor, Rizkallah, Pierre, Nemukhin, Alexander and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2021. Stalling chromophore synthesis of the fluorescent protein Venus reveals the molecular basis of the final oxidation step. Chemical Science 12 (22) , pp. 7735-7745. 10.1039/D0SC06693A
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Worthy, Harley L., Williamson, Lainey J., Auhim, Husam Sabah, Leppla, Stephen H., Sastalla, Inka, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369 and Berry, Colin ORCID: https://orcid.org/0000-0002-9943-548X 2021. The crystal sructure of Bacillus cereus HblL1. Toxins 13 (4) , 253. 10.3390/toxins13040253
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Pope, Jacob R. ORCID: https://orcid.org/0000-0001-6478-5378, Johnson, Rachel L., Jamieson, W. David ORCID: https://orcid.org/0000-0001-8260-5211, Worthy, Harley L., Kailasam, Senthilkumar, Ahmed, Rochelle D., Taban, Ismail, Auhim, Husam Sabah, Watkins, Daniel W. ORCID: https://orcid.org/0000-0003-3825-5036, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Castell, Oliver ORCID: https://orcid.org/0000-0002-6059-8062 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2021. Association of fluorescent protein pairs and it's significant impact on fluorescence and energy transfer. Advanced Science 8 (1) , 2003167. 10.1002/advs.202003167
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Karuna, Arnica, Masia, Francesco ORCID: https://orcid.org/0000-0003-4958-410X, Chappell, Sally, Errington, Rachel ORCID: https://orcid.org/0000-0002-8016-4376, Hartley, Andrew M., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Borri, Paola ORCID: https://orcid.org/0000-0002-7873-3314 and Langbein, Wolfgang ORCID: https://orcid.org/0000-0001-9786-1023 2020. Quantitative imaging of B1 cyclin expression across the cell cycle using green fluorescent protein tagging and epi-fluorescence. Cytometry Part A 97 (10) , pp. 1066-1072. 10.1002/cyto.a.24038
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Bowen, Benjamin J., McGarrity, Adam R., Szeto, Jenn-Yeu A., Pudney, Christopher R. and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2020. Switching protein metalloporphyrin binding specificity by design from iron to fluorogenic zinc. Chemical Communications 56 (31) , pp. 4308-4311. 10.1039/D0CC00596G
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Thomas, Suzanne K. ORCID: https://orcid.org/0000-0003-0342-3298, Jamieson, W. David ORCID: https://orcid.org/0000-0001-8260-5211, Gwyther, Rebecca E. A., Bowen, Benjamin J., Beachey, Adam, Worthy, Harley L., MacDonald, J. Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898, Castell, Oliver K. ORCID: https://orcid.org/0000-0002-6059-8062 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2020. Site-specific protein photochemical covalent attachment to carbon nanotube side walls and its electronic impact on single molecule function. Bioconjugate Chemistry 31 (3) , pp. 584-594. 10.1021/acs.bioconjchem.9b00719
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Gwyther, Rebecca E.A., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Worthy, Harley L. 2019. Better together: building protein oligomers naturally and by design. Biochemical Society Transactions 47 (6) , pp. 1773-1780. 10.1042/BST20190283
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Worthy, Harley L., Sabah Auhim, Husam, Jamieson, W. David ORCID: https://orcid.org/0000-0001-8260-5211, Pope, Jacob R. ORCID: https://orcid.org/0000-0001-6478-5378, Wall, Aaron, Batchlor, Robert, Johnson, Rachel L., Watkins, Daniel W. ORCID: https://orcid.org/0000-0003-3825-5036, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Castell, Oliver K. ORCID: https://orcid.org/0000-0002-6059-8062 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2019. Positive functional synergy of structurally integrated artificial protein dimers assembled by Click chemistry. Communications Chemistry 2 , 83. 10.1038/s42004-019-0185-5
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Gulácsy, Christina E., Meade, Richard, Catici, Dragana A. M., Soeller, Christian, Pantos, G. Dan, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Alibhai, Dominic, Jepson, Mark, Valev, Ventsislav K., Mason, Jody M., Williams, Robert J. and Pudney, Christopher R. 2019. Excitation-energy-dependent molecular beacon detects early stage neurotoxic Aβ aggregates in the presence of cortical neurons. ACS Chemical Neuroscience 10 (3) , pp. 1240-1250. 10.1021/acschemneuro.8b00322
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Zaki, Athraa, Hartley, Andrew, Reddington, Samuel, Thomas, Suzanne ORCID: https://orcid.org/0000-0003-0342-3298, Watson, Peter ORCID: https://orcid.org/0000-0003-0250-7852, Hayes, Anthony, Moskalenko, Andy, Craciun, Monica, MacDonald, John ORCID: https://orcid.org/0000-0001-5504-1692, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898 2018. Defined covalent assembly of protein molecules on graphene using a genetically encoded photochemical reaction handle. RSC Advances 8 , pp. 5768-5775. 10.1039/c7ra11166e
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Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2018. Approaches to single molecule studies of metalloprotein electron transfer using scanning probe-based techniques. Biochemical Society Transactions 46 (1) , pp. 1-9. 10.1042/BST20170229
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Halliwell, Lisa M., Jathoul, Amit P. ORCID: https://orcid.org/0000-0002-6767-7775, Bate, Jack P., Worthy, Harley L., Anderson, James C., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839 2018. ΔFlucs: brighter photinus pyralis firefly luciferases identified by surveying consecutive single amino acid deletion mutations in a thermostable variant. Biotechnology and Bioengineering 115 (1) , pp. 50-59. 10.1002/bit.26451
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Freeley, Mark, Worthy, Harley L., Ahmed, Rochelle, Bowen, Ben, Watkins, Daniel, MacDonald, J. Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Zheng, Ming, Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Palma, Matteo 2017. Site-specific one-to-one click coupling of single proteins to individual carbon nanotubes: a single-molecule approach. Journal of the American Chemical Society 139 (49) , pp. 17834-17840. 10.1021/jacs.7b07362
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Marth, Gabriella, Hartley, Andrew M., Reddington, Samuel C., Sargisson, Lauren L., Parcollet, Marlène, Dunn, Katherine E., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Stulz, Eugen 2017. Precision templated bottom-up multiprotein nanoassembly through defined click chemistry linkage to DNA. ACS Nano 11 (5) , pp. 5003-5010. 10.1021/acsnano.7b01711
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Hartley, Andrew M., Worthy, Harley L., Reddington, Samuel C., Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2016. Molecular basis for functional switching of GFP by two disparate non-native post-translational modifications of a phenyl azide reaction handle. Chemical Science 7 (10) , pp. 6484-6491. 10.1039/C6SC00944A
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Hartley, Andrew M., Zaki, Athraa J., McGarrity, Adam R., Robert-Ansart, Cecile, Moskalenko, Andriy V., Jones, Gareth F. ORCID: https://orcid.org/0000-0001-7709-3995, Craciun, Monica F., Russo, Saverio, Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898, MacDonald, J. Emyr ORCID: https://orcid.org/0000-0001-5504-1692 and Jones, D. Daffydd ORCID: https://orcid.org/0000-0001-7709-3995 2015. Functional modulation and directed assembly of an enzyme through designed non-natural post-translation modification. Chemical Science 6 (7) , pp. 3712-3717. 10.1039/C4SC03900A
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Arpino, James A. J., Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771, McGarrity, Adam R., Tippmann, Eric M. and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2015. In-frame amber stop codon replacement mutagenesis for the directed evolution of proteins containing non-canonical amino acids: identification of residues open to bio-orthogonal modification. PLoS ONE 10 (5) , e0127504. 10.1371/journal.pone.0127504
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Rohamare, Sonali, Gaikwad, Sushama, Jones, Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Bhavnani, Varsha, Pal, Jayanta, Sharma, Ranu and Chatterjee, Prathit 2015. Cloning, expression and in silico studies of a serine protease from a marine actinomycete (Nocardiopsis sp. NCIM 5124). Process Biochemistry 50 (3) , pp. 378-387. 10.1016/j.procbio.2014.12.025

Reddington, Samuel C., Baldwin, Amy J. ORCID: https://orcid.org/0000-0002-2162-3771, Thompson, Rebecca, Brancale, Andrea ORCID: https://orcid.org/0000-0002-9728-3419, Tippmann, Eric M. and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2015. Directed evolution of GFP with non-natural amino acids identifies residues for augmenting and photoswitching fluorescence. Chemical Science 6 (2) , pp. 1159-1166. 10.1039/C4SC02827A
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Reddington, Samuel C., Driezis, Sarunas, Hartley, Andrew M., Watson, Peter Duncan ORCID: https://orcid.org/0000-0003-0250-7852, Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2015. Genetically encoded phenyl azide photochemistry drives positive and negative functional modulation of a red fluorescent protein. RSC Advances 5 (95) , pp. 77734-77738. 10.1039/C5RA13552D
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Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Arpino, James A. J., Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771 and Edmundson, Matthew C. 2014. Transposon-based approaches for generating novel molecular diversity during directed evolution. Gillam, Elizabeth M. J., Copp, Janine M. and Ackerley, David, eds. Directed Evolution Library Creation: Methods and Protocols, Vol. 1179. Methods in Molecular Biology, Springer, pp. 159-172. (10.1007/978-1-4939-1053-3_11)
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Arpino, James Alexander Joseph, Reddington, Samuel C., Halliwell, Lisa Marie, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2014. Random single amino acid deletion sampling unveils structural tolerance and the benefits of helical registry shift on GFP folding and structure. Structure 22 (6) , pp. 889-898. 10.1016/j.str.2014.03.014
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Arpino, James Alexander Joseph, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2014. Structural and dynamic changes associated with beneficial engineered single-amino-acid deletion mutations in enhanced green fluorescent protein. Acta Crystallographica Section D Biological Crystallography 70 (8) , pp. 2152-2162. 10.1107/S139900471401267X
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Reddington, Samuel C., Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Watson, Peter Duncan ORCID: https://orcid.org/0000-0003-0250-7852, Pearson, Rachel, Tippmann, Eric Michael and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2013. Different photochemical events of a genetically encoded phenyl azide define and modulate GFP fluorescence. Angewandte Chemie - International Edition 52 (23) , pp. 5974-5977. 10.1002/anie.201301490

Reddington, Samuel C., Watson, Peter Duncan ORCID: https://orcid.org/0000-0003-0250-7852, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Tippmann, Eric Michael and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2013. Genetically encoding phenyl azide chemistry: new uses and ideas for classical biochemistry. Biochemical Society Transactions 41 (5) , pp. 1177-1182. 10.1042/BST20130094

Morris, Josephine Lydia, Reddington, Samuel C., Murphy, Damien Martin ORCID: https://orcid.org/0000-0002-5941-4879, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Platts, James Alexis ORCID: https://orcid.org/0000-0002-1008-6595 and Tippmann, Eric Michael 2013. Aryl azide photochemistry in defined protein environments. Organic Letters 15 (4) , pp. 728-731. 10.1021/ol3028779

Della Pia, Eduardo Antonio, Macdonald, John Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. Direct binding of a redox protein for single-molecule electron transfer measurements. Small 8 (15) , pp. 2341-2344. 10.1002/smll.201102416

Arpino, James, Czapinska, Honorata, Piasecka, Anna, Edwards, Wayne Robert, Barker, Paul, Gajda, Michal J., Bochler, Matthias ORCID: https://orcid.org/0000-0001-7884-4463 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. Structural basis for efficient chromophore communication and energy transfer in a constructed didomain protein scaffold. Journal of the American Chemical Society 134 (33) , pp. 13632-13640. 10.1021/ja301987h

Della Pia, Eduardo Antonio, Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Macdonald, J. Emyr ORCID: https://orcid.org/0000-0001-5504-1692 2012. Orientation-dependent electron transport in a single redox protein [RETRACTED]. ACS Nano 6 (1) , pp. 355-361. 10.1021/nn2036818

Della Pia, Eduardo Antonio, Chi, Qijin, Macdonald, John Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Ulstrup, Jens, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898 2012. Fast electron transfer through a single molecule natively structured redox protein. Nanoscale 4 (22) , pp. 7106-7113. 10.1039/c2nr32131a

Della Pia, Eduardo Antonio, Chi, Qijin, Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898, Macdonald, John Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Ulstrup, Jens and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. Redox tuning of cytochrome b562 through facile metal porphyrin substitution. Chemical Communications 48 (86) , pp. 10624-10626. 10.1039/c2cc34302a

Gamble, Michael David, Kunze, Georg, Brancale, Andrea ORCID: https://orcid.org/0000-0002-9728-3419, Wilson, Keith S. and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. The role of substrate specificity and metal binding in defining the activity and structure of an intracellular subtilisin. FEBS Open Bio 2 , pp. 209-215. 10.1016/j.fob.2012.07.001

Arpino, James, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. Crystal structure of enhanced green fluorescent protein to 1.35 Å resolution reveals alternative conformations for Glu222. PLoS ONE 7 (10) , e47132. 10.1371/journal.pone.0047132
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Reddington, Samuel C., Tippmann, Eric Michael and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2012. Residue choice defines efficiency and influence of bioorthogonal protein modification via genetically encoded strain promoted Click chemistry. Chemical Communications 48 (67) , pp. 8419-8421. 10.1039/c2cc31887c

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2011. Recombining low homology, functionally rich regions of bacterial subtilisins by combinatorial fragment exchange. PLoS ONE 6 (9) , e24319. 10.1371/journal.pone.0024319
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Gamble, Michael David, Kunze, Georg, Dodson, Eleanor J., Wilson, Keith S. and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2011. Regulation of an intracellular subtilisin protease activity by a short propeptide sequence through an original combined dual mechanism. Proceedings of the National Academy of Sciences 108 (9) , pp. 3536-3541. 10.1073/pnas.1014229108

Della Pia, Eduardo Antonio, Chi, Qijin, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Macdonald, John Emyr ORCID: https://orcid.org/0000-0001-5504-1692, Ulstrup, Jens and Elliott, Martin ORCID: https://orcid.org/0000-0002-9254-9898 2011. Single-molecule mapping of long-range electron transport for a cytochrome b562 variant. Nano Letters 11 (1) , pp. 176-182. 10.1021/nl103334q

Vevodova, Jiyka, Gamble, Michael David, Kunze, Georg, Ariza, Antonio, Dodson, Eleanor, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Wilson, Keith S. 2010. Crystal structure of an intracellular subtilisin reveals novel structural features unique to this subtilisin family. Structure 18 (6) , pp. 744-755. 10.1016/j.str.2010.03.008

Edwards, Wayne Robert, Williams, Abigail J., Morris, Josephine Lydia, Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771, Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2010. Regulation of β-Lactamase activity by remote binding of Heme: functional coupling of unrelated proteins through domain insertion. Biochemistry 49 (31) , pp. 6541-6549. 10.1021/bi100793y

Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771, Arpino, James Alexander, Edwards, W. R., Tippmann, Eric Michael and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2009. Expanded chemical diversity sampling through whole protein evolution. Molecular Biosystems 5 (7) , pp. 764-766. 10.1039/B904031E
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Stott, K. M., Yusof, A. M., Perham, R. N. and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2009. A Surface Loop Directs Conformational Switching of a Lipoyl Domain Between a Folded and a Novel Misfolded Structure. Structure 17 (8) , pp. 1117-1127. 10.1016/j.str.2009.07.001

Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771, Busse, K., Simm, A. M. and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2008. Expanded molecular diversity generation during directed evolution by trinucleotide exchange (TriNEx). Nucleic Acids Research 36 (13) , e77. 10.1093/nar/gkn358
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Meltzer, Michael, Hasenbein, Sonja, Hauske, Patrick, Kucz, Nicolette, Merdanovic, Melisa, Grau, Sandra, Beil, Alexandra, Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Krojer, Tobias, Clausen, Tim, Ehrmann, Michael ORCID: https://orcid.org/0000-0002-1927-260X and Kaiser, Markus 2008. Allosteric activation of HtrA protease DegP by stress signals during bacterial protein quality control. Angewandte Chemie - International Edition 47 (7) , pp. 1332-1334. 10.1002/anie.200703273

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Perham, R. N. 2008. The role of loop and β-turn residues as structural and functional determinants for the lipoyl domain from the Escherichia coli 2-oxoglutarate dehydrogenase complex. Biochemical Journal 409 , pp. 357-366. 10.1042/BJ20071119

Edwards, W. R., Busse, K., Allemann, Rudolf Konrad ORCID: https://orcid.org/0000-0002-1323-8830 and Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2008. Linking the functions of unrelated proteins using a novel directed evolution domain insertion method. Nucleic Acids Research 36 (13) 10.1093/nar/gkn363

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Perham, Richard N. 2007. The role of loop and β-turn residues as structural and functional determinants for the lipoyl domain from the Escherichia coli 2-oxoglutarate dehydrogenase complex. Biochemical Journal 409 , pp. 357-366. 10.1042/BJ20071119

Simm, Alan M., Baldwin, Amy Joy ORCID: https://orcid.org/0000-0002-2162-3771, Busse, Kathy and Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2007. Investigating protein structural plasticity by surveying the consequence of an amino acid deletion from TEM-1 β-lactamase. FEBS Letters 581 (21) , pp. 3904-3908. 10.1016/j.febslet.2007.07.018

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Barker, P.D. 2005. Controlling self-assembly by linking protein folding, DNA binding and the redox chemistry of heme. Angewandte Chemie International Edition , pp. 6337-6341. 10.1002/anie.200463035

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 2005. Triplet nucleotide removal at random positions in a target gene: the tolerance of TEM-1 β-lactamase to an amino acid deletion. Nucleic Acids Research 33 (9) 10.1093/nar/gni077

Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995 and Barker, Paul D. 2004. Design and characterisation of an artificial DNA-binding cytochrome. ChemBioChem 5 (7) , pp. 964-971. 10.1002/cbic.200300569

Perham, Richard N., Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Chauhan, Hitesh J. and Howard, Mark J. 2002. Substrate channelling in 2-oxo acid dehydrogenase multienzyme complexes. Biochemical Society Transactions 30 (2) , 47–51. 10.1042/0300-5127:0300047

Jones, Darran Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Perham, R.N., Reche, P.A. and Stott, K.M. 2001. Recognition of the lipoyl domain is the ultimate determinant of substrate channelling in the pyruvate dehydrogenase multienzyme complex. Journal of Molecular Biology , pp. 49-60. 10.1006/jmbi.2000.4257

Jones, D. Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Stott, Katherine M., Howard, Mark J. and Perham, Richard N. 2000. Restricted motion of the lipoyl-lysine swinging arm in the pyruvate dehydrogenase complex of Escherichia coli†,‡. Biochemistry 39 (29) , 8448–8459. 10.1021/bi992978i

Jones, D.Dafydd ORCID: https://orcid.org/0000-0001-7709-3995, Horne, H.James, Reche, Pedro A and Perham, Richard N 2000. Structural determinants of post-translational modification and catalytic specificity for the lipoyl domains of the pyruvate dehydrogenase multienzyme complex of Escherichia coli. Journal of Molecular Biology 295 (2) , pp. 289-306. 10.1006/jmbi.1999.3335

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