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Number of items: 53.

Tanaka, Mayuki, Sotta, Naoyuki ORCID: https://orcid.org/0000-0001-5558-5155, Duncan, Susan, Chiba, Yukako, Onouchi, Hitoshi, Marée, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484, Naito, Satoshi, Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301 and Fujiwara, Toru 2025. Ribosome stalling-induced NIP5;1 mRNA decay triggers ARGONAUTE1-dependent transcription downregulation. Nucleic Acids Research 53 (5) 10.1093/nar/gkaf159
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Champneys, Alan R., Al Saadi, Fahad, Breña-Medina, Victor F., Grieneisen, Verônica A. ORCID: https://orcid.org/0000-0001-6780-8301, Maree, Athanasius F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Verschueren, Nicolas and Wuyts, Bert 2021. Bistability, wave pinning and localisation in natural reaction-diffusion systems. Physica D: Nonlinear Phenomena 416 , 132735. 10.1016/j.physd.2020.132735

Lee, Karen J. I., Bushell, Claire, Koide, Yohei, Fozard, John A., Piao, Chunlan, Yu, Man, Newman, Jacob, Whitewoods, Christopher, Avondo, Jerome, Kennaway, Richard, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484, Cui, Minlong and Coen, Enrico 2019. Shaping of a three-dimensional carnivorous trap through modulation of a planar growth mechanism. PLoS Biology 17 (10) , e3000427. 10.1371/journal.pbio.3000427
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Li, Xin-Ran, Vroomans, Renske M. A., Fox, Samantha, Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301, Ostergaard, Lars and Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 2019. Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening. Molecular Plant 12 (6) , pp. 863-878. 10.1016/j.molp.2019.05.003
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Fox, Samantha, Southam, Paul, Pantin, Florent, Kennaway, Richard, Robinson, Sarah, Castorina, Giulia, Sánchez-Corrales, Yara E., Sablowski, Robert, Chan, Jordi, Grieneisen, Verônica ORCID: https://orcid.org/0000-0001-6780-8301, Maree, Athanasius F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Bangham, J. Andrew and Coen, Enrico 2018. Spatiotemporal coordination of cell division and growth during organ morphogenesis. PLoS Biology 16 (11) , e2005952. 10.1371/journal.pbio.2005952
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Tomkins, Melissa, Kliot, Adi, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Hogenhout, Saskia A. 2018. A multi-layered mechanistic modelling approach to understand how effector genes extend beyond phytoplasma to modulate plant hosts, insect vectors and the environment. Current Opinion in Plant Biology 44 , pp. 39-48. 10.1016/j.pbi.2018.02.002
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Sánchez-Corrales, Yara E., Hartley, Matthew, van Rooij, Jop, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Grieneisen, Verônica A. ORCID: https://orcid.org/0000-0001-6780-8301 2018. Morphometrics of complex cell shapes: lobe contribution elliptic Fourier analysis (LOCO-EFA). Development 145 (6) , dev156778. 10.1242/dev.156778
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Carter, Ross, Sánchez-Corrales, Yara E., Hartley, Matthew, Grieneisen, Verônica A. ORCID: https://orcid.org/0000-0001-6780-8301 and Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 2017. Pavement cells and the topology puzzle. Development 144 (23) , pp. 4386-4397. 10.1242/dev.157073
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Di Mambro, Riccardo, De Ruvo, Micol, Pacifici, Elena, Salvi, Elena, Sozzani, Rosangela, Benfey, Philip N., Busch, Wolfgang, Novak, Ondrej, Ljung, Karin, Di Paola, Luisa, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484, Costantino, Paolo, Grieneisen, Verônica A. ORCID: https://orcid.org/0000-0001-6780-8301 and Sabatini, Sabrina 2017. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root. Proceedings of the National Academy of Sciences 114 (36) , E7641-E7649. 10.1073/pnas.1705833114
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Sotta, Naoyuki ORCID: https://orcid.org/0000-0001-5558-5155, Duncan, Susan, Tanaka, Mayuki, Sato, Takafumi, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484, Fujiwara, Toru and Grieneisen, Verônica A. ORCID: https://orcid.org/0000-0001-6780-8301 2017. Rapid transporter regulation prevents substrate flow traffic jams in boron transport. eLife 6 , e27038. 10.7554/eLife.27038
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Gadhamsetty, S., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Beltman, J.B. and de Boer, R.J. 2017. A sigmoid functional response emerges when Cytotoxic T Lymphocytes start killing fresh target cells. Biophysical Journal 112 (6) , pp. 1221-1235. 10.1016/j.bpj.2017.02.008
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Gadhamsetty, Saikrishna, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484, de Boer, Rob J. and Beltman, Joost B. 2017. Tissue dimensionality influences the functional response of cytotoxic T lymphocyte-mediated killing of targets. Frontiers in Immunology 7 , 668. 10.3389/fimmu.2016.00668
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Abley, Katie, Sauret-Gueto, Susanna, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Coen, Enrico 2016. Formation of polarity convergences underlying shoot outgrowths. eLife 5 , e18165. 10.7554/eLife.18165
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el-Showk, S., Help-Rinta-Rahko, H., Blomster, T., Siligato, R., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Mahonen, A.P. and Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 2015. Parsimonious model of vascular patterning links transverse hormone fluxes to lateral root initiation: auxin leads the way, while cytokinin levels out. PLoS Computational Biology 11 (10) , -. 10.1371/journal.pcbi.1004450

Polko, J.K., van Rooij, J.A., Vanneste, S., Pierik, R., Ammerlaan, A.M.H., Vergeer-Van Eijk, M.H., McLoughlin, F., Guhl, K., Van Isterdael, G., Voesenek, L.A.C.J., Millenaar, F.F., Beeckman, T., Peeters, A.J.M., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and van Zanten, M. 2015. Ethylene-mediated regulation of A2-type CYCLINs modulates hyponastic growth in arabidopsis. Plant Physiology 169 (1) , pp. 194-208. 10.1104/pp.15.00343

Magno, R., Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 and Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 2015. The biophysical nature of cells: Potential cell behaviours revealed by analytical and computational studies of cell surface mechanics. BMC Biophysics 8 (1) , -. 10.1186/s13628-015-0022-x
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Shimotohno, A., Sotta, N., Sato, T., De Ruvo, M., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 and Fujiwara, T. 2015. Mathematical modeling and experimental validation of the spatial distribution of boron in the root of arabidopsis thaliana identify high boron accumulation in the tip and predict a distinct root tip uptake function. Plant and Cell Physiology 56 (4) , pp. 620-630. 10.1093/pcp/pcv016
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Gadhamsetty, S., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Beltman, J.B. and De Boer, R.J. 2014. A general functional response of cytotoxic T lymphocyte-mediated killing of target cells. Biophysical Journal 106 (8) , pp. 1780-1791. 10.1016/j.bpj.2014.01.048

Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301, Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Østergaard, L. 2013. Juicy stories on female reproductive tissue development: Coordinating the hormone flows. Journal of Integrative Plant Biology 55 (9) , pp. 847-863. 10.1111/jipb.12092

Abley, K., Barbier de Reuille, P., Strutt, D., Bangham, A., Prusinkiewicz, P., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Grieneisen, Veronica ORCID: https://orcid.org/0000-0001-6780-8301 and Coen, E. 2013. An intracellular partitioning-based framework for tissue cell polarity in plants and animals. Development 140 (10) , pp. 2061-2074. 10.1242/dev.062984

Ariotti, S., Beltman, J.B., Chodaczek, G., Hoekstra, M.E., Van Beek, A.E., Gomez-Eerland, R., Ritsma, L., Van Rheenen, J., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Zal, T., De Boer, R.J., Haanen, J.B.A.G. and Schumacher, T.N. 2012. Tissue-resident memory CD8+ T cells continuously patrol skin epithelia to quickly recognize local antigen. Proceedings of the National Academy of Sciences of the United States of America 109 (48) , pp. 19739-19744. 10.1073/pnas.1208927109

Vroomans, R.M.A., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, de Boer, R.J. and Beltman, J.B. 2012. Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens. PLoS Computational Biology 8 (11) , -. 10.1371/journal.pcbi.1002763

Walther, G.R., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Edelstein-Keshet, L. and Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 2012. Deterministic Versus Stochastic Cell Polarisation Through Wave-Pinning. Bulletin of Mathematical Biology 74 (11) , pp. 2570-2599. 10.1007/s11538-012-9766-5

Cruz-Ramirez, Alfredo, Diaz-Trivino, Sara, Blilou, Ikram, Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301, Sozzani, Rosangela, Zamioudis, Christos, Miskolczi, Pal, Nieuwland, Jeroen, Benjamins, Rene, Dhonukshe, Pankaj, Caballero-Perez, Juan, Horvath, Beatrix, Long, Yuchen, Mahonen, Ari Pekka, Zhang, Hongtao, Xu, Jian, Murray, James Augustus Henry ORCID: https://orcid.org/0000-0002-2282-3839, Benfey, Philip N., Bako, Laszlo, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Scheres, Ben ORCID: https://orcid.org/0000-0001-5400-9578 2012. A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150 (5) , pp. 1002-1015. 10.1016/j.cell.2012.07.017

Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301, Scheres, Ben ORCID: https://orcid.org/0000-0001-5400-9578, Hogeweg, Paulien and Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 2012. Morphogengineering roots: comparing mechanisms of morphogen gradient formation. BMC Systems Biology 6 , -. 10.1186/1752-0509-6-37
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Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 and Edelstein-Keshet, L. 2012. How cells integrate complex stimuli: The effect of feedback from phosphoinositides and cell shape on cell polarization and motility. PLoS Computational Biology 8 (3) , -. 10.1371/journal.pcbi.1002402

Polko, J.K., van Zanten, M., van Rooij, J.A., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Voesenek, L.A.C.J., Peeters, A.J.M. and Pierik, R. 2011. Ethylene-induced differential petiole growth in Arabidopsis thaliana involves local microtubule reorientation and cell expansion. New Phytologist 193 (2) , pp. 339-348. 10.1111/j.1469-8137.2011.03920.x

Beltman, J.B., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and De Boer, R.J. 2009. Analysing immune cell migration. Nature Reviews Immunology 9 (11) , pp. 789-798. 10.1038/nri2638

Marmottant, P., Mgharbel, A., Kafer, J., Audren, B., Rieu, J.-P., Vial, J.-C., Van Der Sanden, B., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Graner, F. and Delanoe 2009. The role of fluctuations and stress on the effective viscosity of cell aggregates. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 106 (41) , pp. 17271-17275. 10.1073/pnas.0902085106

Beltman, J.B., Henrickson, S.E., von Andrian, U.H., de Boer, R.J. and Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 2009. Towards estimating the true duration of dendritic cell interactions with T cells. Journal of Immunological Methods 347 (1-2) , pp. 54-69. 10.1016/j.jim.2009.05.013

Laskowski, Marta, Grieneisen, Veronica A. ORCID: https://orcid.org/0000-0001-6780-8301, Hofhuis, Hugo, ten Hove, Colette A., Hogeweg, Paulien, Maree, Athanasius F. M. ORCID: https://orcid.org/0000-0003-2689-2484 and Scheres, Ben ORCID: https://orcid.org/0000-0001-5400-9578 2008. Root system architecture from coupling cell shape to auxin transport. PLoS Biology 6 (12) , pp. 2721-2735. 10.1371/journal.pbio.0060307
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Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Komba, M., Finegood, D.T. and Edelstein-Keshet, L. 2008. A quantitative comparison of rates of phagocytosis and digestion of apoptotic cells by macrophages from normal (BALB/c) and diabetes-prone (NOD) mice. Journal of Applied Physiology 104 (1) , pp. 157-169. 10.1152/japplphysiol.00514.2007

Kafer, J., Hayashi, T., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Carthew, R.W. and Graner, F. 2007. Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 104 (47) , pp. 18549-18554. 10.1073/pnas.0704235104

Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301, Xu, J., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Hogeweg, P. and Scheres, B. 2007. Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449 (7165) , pp. 1008-1013. 10.1038/nature06215

Jilkine, A., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Edelstein-Keshet, L. 2007. Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk. Bulletin of Mathematical Biology 69 (6) , pp. 1943-1978. 10.1007/s11538-007-9200-6

Beltman, J.B., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and De Boer, R.J. 2007. Spatial modelling of brief and long interactions between T cells and dendritic cells. Immunology and Cell Biology 85 (4) , pp. 306-314. 10.1038/sj.icb.7100054

Beltman, J.B., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Lynch, J.N., Miller, M.J. and De Boer, R.J. 2007. Lymph node topology dictates T cell migration behavior. Journal of Experimental Medicine 204 (4) , pp. 771-780. 10.1084/jem.20061278

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Jilkine, A., Dawes, A., Grieneisen, V.A. ORCID: https://orcid.org/0000-0001-6780-8301 and Edelstein-Keshet, L. 2006. Polarization and movement of keratocytes: A multiscale modelling approach. Bulletin of Mathematical Biology 68 (5) , pp. 1169-1211. 10.1007/s11538-006-9131-7

Kafer, J., Hogeweg, P. and Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 2006. Moving forward moving backward: Directional sorting of chemotactic cells due to size and adhesion differences. PLoS Computational Biology 2 (6) , 0518-0529. 10.1371/journal.pcbi.0020056

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Santamaria, P. and Edelstein-Keshet, L. 2006. Modeling competition among autoreactive CD8+ T cells in autoimmune diabetes: Implications for antigen-specific therapy. International Immunology 18 (7) , pp. 1067-1077. 10.1093/intimm/dxl040

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Kublik, R., Finegood, D.T. and Edelstein-Keshet, L. 2006. Modelling the onset of Type 1 diabetes: Can impaired macrophage phagocytosis make the difference between health and disease? Philosophical Transactions A: Mathematical, Physical and Engineering Sciences 364 (1842) , pp. 1267-1282. 10.1098/rsta.2006.1769

Groenenboom, M.A.C., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Hogeweg, P. 2005. The RNA silencing pathway: The bits and pieces that matter. PLoS Computational Biology 1 (2) , 0155-0165. 10.1371/journal.pcbi.0010021

Han, B., Serra, P., Amrani, A., Yamanouchi, J., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Edelstein-Keshet, L. and Santamaria, P. 2005. Prevention of diabetes by manipulation of anti-IGRP autoimmunity: High efficiency of a low-affinity peptide. Nature Medicine 11 (6) , pp. 645-652. 10.1038/nm1250

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Komba, M., Dyck, C., Łabęcki, M., Finegood, D.T. and Edelstein-Keshet, L. 2005. Quantifying macrophage defects in type 1 diabetes. Journal of Theoretical Biology 233 (4) , pp. 533-551. 10.1016/j.jtbi.2004.10.030

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Hogeweg, P. 2002. Modelling Dictyostelium discoideum morphogenesis: The culmination. Bulletin of Mathematical Biology 64 (2) , pp. 327-353. 10.1006/bulm.2001.0277

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Hogeweg, P. 2001. How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98 (7) , pp. 3879-3883. 10.1073/pnas.061535198

Muller, V., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and De Boer, R.J. 2001. Release of virus from lymphoid tissue affects human immunodeficiency virus type 1 and hepatitis C virus kinetics in the blood. Journal of Virology 75 (6) , pp. 2597-2603. 10.1128/JVI.75.6.2597-2603.2001

Muller, V., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and De Boer, R.J. 2001. Small variations in multiple parameters account for wide variations in HIV-1 set-points: A novel modelling approach. Proceedings of the Royal Society B: Biological Sciences 268 (1464) , pp. 235-242. 10.1098/rspb.2000.1358

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Keulen, W., Boucher, C.A.B. and De Boer, R.J. 2000. Estimating relative fitness in viral competition experiments. Journal of Virology 74 (23) , pp. 11067-11072. 10.1128/JVI.74.23.11067-11072.2000

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Panfilov, A.V. and Hogeweg, P. 1999. Migration and thermotaxis of dictyostelium discoideum slugs, a model study. Journal of Theoretical Biology 199 (3) , pp. 297-309. 10.1006/jtbi.1999.0958

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484, Panfilov, A.V. and Hogeweg, P. 1999. Phototaxis during the slug stage of Dictyostelium discoideum: A model study. Proceedings of the Royal Society B: Biological Sciences 266 (1426) , pp. 1351-1360. 10.1098/rspb.1999.0787

Van Wezel, R.J.A., Lankheet, M.J.M., Verstraten, F.A.J., Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Van De Grind, W.A. 1998. Responses of complex cells in area 17 of the cat to bi-vectorial transparent motion. Vision Research 36 (18) , pp. 2805-2813. 10.1016/0042-6989(95)00324-X

Maree, A.F.M. ORCID: https://orcid.org/0000-0003-2689-2484 and Panfilov, A.V. 1997. Spiral breakup in excitable tissue due to lateral instability. Physical review letters 78 (9) , pp. 1819-1822. 10.1103/PhysRevLett.78.1819

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