ORCA
Online Research @ Cardiff

Clear Cookie - decide language by browser settings

Browse by Current Cardiff authors

Number of items: 81.

Kurtyka, Magdalena, Wessely, Frank, Bau, Sarah, Ifie, Eseoghene, He, Liqun, de Wit, Nienke M., Pedersen, Alberte Bay Villekjær, Keller, Maximilian, Webber, Caleb

, de Vries, Helga E., Ansorge, Olaf, Betsholtz, Christer, De Bock, Marijke, Chaves, Catarina, Brodin, Birger, Nielsen, Morten S., Neuhaus, Winfried, Bell, Robert D., Letoha, Tamás, Meyer, Axel H., Leparc, Germán, Lenter, Martin, Lesuisse, Dominique, Cader, Zameel M., Buckley, Stephen T., Loryan, Irena and Pietrzik, Claus U. 2024. The solute carrier SLC7A1 may act as a protein transporter at the blood-brain barrier. European Journal of Cell Biology 103 (2) , 151406. 10.1016/j.ejcb.2024.151406

Nassiri, Isar, Kwok, Andrew J, Bhandari, Aneesha, Bull, Katherine R, Garner, Lucy C, Klenerman, Paul, Webber, Caleb

, Parkkinen, Laura, Lee, Angela W, Wu, Yanxia, Fairfax, Benjamin, Knight, Julian C, Buck, David and Piazza, Paolo 2024. Demultiplexing of single-cell RNA-sequencing data using interindividual variation in gene expression. Bioinformatics Advances 4 (1) , vbae085. 10.1093/bioadv/vbae085

Tsartsalis, Stergios, Sleven, Hannah, Fancy, Nurun, Wessely, Frank, Smith, Amy M., Willumsen, Nanet, Cheung, To Ka Dorcas, Rokicki, Michal J., Chau, Vicky, Ifie, Eseoghene, Khozoie, Combiz, Ansorge, Olaf, Yang, Xin, Jenkyns, Marion H., Davey, Karen, McGarry, Aisling, Muirhead, Robert C. J., Debette, Stephanie, Jackson, Johanna S., Montagne, Axel, Owen, David R., Miners, J. Scott, Love, Seth, Webber, Caleb

, Cader, M. Zameel and Matthews, Paul M. 2024. A single nuclear transcriptomic characterisation of mechanisms responsible for impaired angiogenesis and blood-brain barrier function in Alzheimer’s disease. Nature Communications 15 , 2243. 10.1038/s41467-024-46630-z

Li, Zongze

, Fernandez Cardo, Lucia, Rokicki, Michal, Monzon Sandoval, Jimena, Volpato, Viola, Wessely, Frank, Webber, Caleb

and Li, Meng

2024. Differential growth and transcriptomic profile of stem cell-derived midbrain astrocytes. eLife

Fernandez Cardo, Lucia, Monzón Sandoval, Jimena, Li, Zongze

, Webber, Caleb

and Li, Meng

2023. Single-cell transcriptomics and In vitro lineage tracing reveals differential susceptibility of human iPSC-derived midbrain dopaminergic neurons in a cellular model of Parkinson's Disease. Cells 12 (24) , 2860. 10.3390/cells12242860

Sri, Sarmi, Greenstein, Adam, Granata, Alessandra, Collcutt, Alex, Jochems, Angela C C, McColl, Barry W, Castro, Blanca Díaz, Webber, Caleb

, Reyes, Carmen Arteaga, Hall, Catherine, Lawrence, Catherine B, Hawkes, Cheryl, Pegasiou-Davies, Chrysia-Maria, Gibson, Claire, Crawford, Colin L, Smith, Colin, Vivien, Denis, McLean, Fiona H, Wiseman, Frances, Brezzo, Gaia, Lalli, Giovanna, Pritchard, Harry A T, Markus, Hugh S, Bravo-Ferrer, Isabel, Taylor, Jade, Leiper, James, Berwick, Jason, Gan, Jian, Gallacher, John, Moss, Jonathan, Goense, Jozien, McMullan, Letitia, Work, Lorraine, Evans, Lowri, Stringer, Michael S, Ashford, MLJ, Abulfadl, Mohamed, Conlon, Nina, Malhotra, Paresh, Bath, Philip, Canter, Rebecca, Brown, Rosalind, Ince, Selvi, Anderle, Silvia, Young, Simon, Quick, Sophie, Szymkowiak, Stefan, Hill, Steven, Allan, Stuart, Wang, Tao, Quinn, Terry, Procter, Tessa, Farr, Tracy D, Zhao, Xiangjun, Yang, Zhiyuan, Hainsworth, Atticus H and Wardlaw, Joanna M 2023. A multi-disciplinary commentary on preclinical research to investigate vascular contributions to dementia. Cerebral Circulation - Cognition & Behavior 5 , 100189. 10.1016/j.cccb.2023.100189

Keefe, Francesca, Monzon Sandoval, Jimena, Rosser, Anne E.

, Webber, Caleb

and Li, Meng

2023. Single-cell transcriptomics reveals conserved regulatory networks in human and mouse interneuron development. International Journal of Molecular Sciences 24 (9) , 8122. 10.3390/ijms24098122

Cameron, Darren, Mi, Da, Vinh, Ngoc-Nga, Webber, Caleb

, Li, Meng

, Marin, Oscar, O'Donovan, Michael

and Bray, Nicholas

2023. Single nuclei RNA sequencing of 5 regions of the human prenatal brain implicates developing neuron populations in genetic risk for schizophrenia. Biological Psychiatry 93 , pp. 157-166. 10.1016/j.biopsych.2022.06.033

Sandor, Cynthia

, Millin, Stephanie, Dahl, Andrew, Schalkamp, Ann-Kathrin, Lawton, Michael, Hubbard, Leon, Rahman, Nabila, Williams, Nigel

, Ben-Shlomo, Yoav, Grosset, Donald G., Hu, Michele T., Marchini, Jonathan and Webber, Caleb

2022. Universal clinical Parkinson’s disease axes identify a major influence of neuroinflammation. Genome Medicine 14 , 129. 10.1186/s13073-022-01132-9

Monzón-Sandoval, Jimena, Burlacu, Elena, Agarwal, Devika, Handel, Adam E., Wei, Liting, Davis, John, Cowley, Sally A., Cader, M. Zameel and Webber, Caleb

2022. Lipopolysaccharide distinctively alters human microglia transcriptomes to resemble microglia from Alzheimer's disease mouse models. Disease Models and Mechanisms 15 (10) , dmm049349. 10.1242/dmm.049349

Pokhilko, Alexandra, Handel, Adam, Curion, Fabiola, Volpato, Viola, Whiteley, Emma, Bostrand, Sunniva, Newey, Sarah, Akerman, Colin, Webber, Caleb

, Clark, Michael, Bowden, Rory and Cader, M. Zameel 2022. Targeted single-cell RNA sequencing of transcription factors facilitates biological insights from human cell experimental models. Genome Research 31 , pp. 1069-1081. 10.1101/gr.273961.120

Monzon-Sandoval, Jimena, Burlacu, Elena, Agarwal, Devika, Handel, Adam, Wei, Liting, Davis, John, Cowley, Sally, Cader, Zameel and Webber, Caleb

2022. LPS distinctively alters iPSC-microglia transcriptomes to resemble Alzheimer’s disease genetic mouse model microglia. Disease Models and Mechanisms

Meijboom, Katharina, Volpato, Viola, Monzón-Sandoval, Jimena, Hoolachan, Joseph, Hammond, Suzan, Abendroth, Frank, deJong, Olivier, Hazell, Gareth, Ahlskog, Nina, Wood, Matthew, Webber, Caleb

and Bowerman, Melissa 2021. Combining multi-omics and drug perturbation profiles to identify muscle-specific treatments for spinal muscular atrophy. JCI Insight 6 (13) , e149446. 10.1172/jci.insight.149446

Ward, Joey, Tunbridge, Elizabeth M., Sandor, Cynthia

, Lyall, Laura M., Ferguson, Amy, Strawbridge, Rona J., Lyall, Donald M., Cullen, Breda, Graham, Nicholas, Johnston, Keira J. A., Webber, Caleb

, Escott-Price, Valentina

, O'Donovan, Michael

, Pell, Jill P., Bailey, Mark E. S., Harrison, Paul J. and Smith, Daniel J. 2020. The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function. Molecular Psychiatry 25 , pp. 3091-3099. 10.1038/s41380-019-0439-8

Mencacci, Niccolò, Reynolds, Regina, Garcia Ruiz, Sonia, Vandrovcova, Jana, Forabosco, Paola, Sánchez-Ferrer, Alvaro, Volpato, Viola, Weale, Michael E., Bhatia, Kailash P., Webber, Caleb

, Hardy, John, Botía, Juan and Ryten, Mina 2020. Dystonia genes functionally converge in specific neurons and share neurobiology with psychiatric disorders. Brain 143 (9) , pp. 2771-2787. 10.1093/brain/awaa217

Agarwal, Devika, Sandor, Cynthia

, Volpato, Viola, Caffrey, Tara M., Monzon Sandoval, Jimena, Bowden, Rory, Alegre-Abarrategui, Javier, Wade-Martins, Richard and Webber, Caleb

2020. A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders. Nature Communications 11 (1) , 4183. 10.1038/s41467-020-17876-0

Hedegaard, Anne, Monzón-Sandoval, Jimena, Newey, Sarah E., Whiteley, Emma S., Webber, Caleb

and Akerman, Colin J. 2020. Pro-maturational effects of human iPSC-derived cortical astrocytes upon iPSC-derived cortical neurons. Stem Cell Reports 15 , pp. 1-14. 10.1016/j.stemcr.2020.05.003

Monzón‐Sandoval, Jimena, Poggiolini, Ilaria, Ilmer, Tobias, Wade-Martins, Richard, Webber, Caleb

and Parkkinen, Laura 2020. Human‐specific transcriptome of ventral and dorsal midbrain dopamine neurons. Annals of Neurology 87 (6) , pp. 853-868. 10.1002/ana.25719

Carling, Phillippa J, Mortiboys, Heather, Green, Claire, Mihaylov, Simeon, Sandor, Cynthia

, Schwartzentruber, Aurelie, Taylor, Rosie, Wei, Wenbin, Hastings, Chris, Wong, Siew, Lo, Christine, Evetts, Samuel, Clemmens, Hannah, Wyles, Matthew, Willcox, Sam, Payne, Thomas, Hughes, Rachel, Ferraiuolo, Laura, Webber, Caleb

, Hide, Winston, Wade-Martins, Richard, Talbot, Kevin, Hu, Michele T. and Bandmann, Oliver 2020. Deep phenotyping of peripheral tissue facilitates mechanistic disease stratification in sporadic Parkinson's disease. Progress in Neurobiology 187 , 101772. 10.1016/j.pneurobio.2020.101772

Williams, Nigel M.

, Hubbard, Leon, Sandor, Cynthia

, Webber, Caleb

, Hendry, Hannah, Lawton, Michael, Carroll, Camille, Chaudhuri, K. Ray, Morris, Huw, Hu, Michele T., Grosset, Donald G., Kobylecki, Christopher and Silverdale, Monty 2020. Genome‐wide association study of pain in Parkinson's disease implicates TRPM8 as a risk factor. Movement Disorders 35 (4) , pp. 705-707. 10.1002/mds.28001

Volpato, Viola and Webber, Caleb

2020. Addressing variability in iPSC-derived models of human disease: guidelines to promote reproducibility. Disease Models and Mechanisms 13 (1) , dmm042317. 10.1242/dmm.042317

Mancuso, Renzo, Fryatt, Gemma, Cleal, Madeleine, Obst, Juliane, Pipi, Elena, Monzón-Sandoval, Jimena, Ribe, Elena, Winchester, Laura, Webber, Caleb

, Nevado, Alejo, Jacobs, Tom, Austin, Nigel, Theunis, Clara, Grauwen, Karolien, Ruiz, Eva Daniela, Mudher, Amrit, Vicente-Rodriguez, Marta, Parker, Christine A., Simmons, Camilla, Cash, Diana, Richardson, Jill, Bullmore, Edward T., Bhatti, Junaid, Chamberlain, Samuel J., Correia, Marta M., Crofts, Anna L., Dickinson, Amber, Foster, Andrew C., Kitzbichler, Manfred G., Knight, Clare, Lynall, Mary-Ellen, Maurice, Christina, O'Donnell, Ciara, Pointon, Linda J., Hyslop, Peter St. George, Turner, Lorinda, Vertes, Petra, Widmer, Barry, Williams, Guy B., Morgan, B. Paul

, Leckey, Claire A., Morgan, Angharad R.

, O'Hagan, Caroline, Touchard, Samuel, Cavanagh, Jonathan, Deith, Catherine, Farmer, Scott, McClean, John, McColl, Alison, McPherson, Andrew, Scouller, Paul, Sutherland, Murray, Boddeke, H. W. G. M. (Erik), Richardson, Jill C., Khan, Shahid, Murphy, Phil, Parker, Christine A., Patel, Jai, Jones, Declan, de Boer, Peter, Kemp, John, Drevets, Wayne C., Nye, Jeffrey S., Wittenberg, Gayle, Isaac, John, Bhattacharya, Anindya, Carruthers, Nick, Kolb, Hartmuth, Pariante, Carmine M., Turkheimer, Federico, Barker, Gareth J., Byrom, Heidi, Cash, Diana, Cattaneo, Annamaria, Gee, Antony, Hastings, Caitlin, Mariani, Nicole, McLaughlin, Anna, Mondelli, Valeria, Nettis, Maria, Nikkheslat, Naghmeh, Randall, Karen, Sheridan, Hannah, Simmons, Camilla, Singh, Nisha, VAn Loo, Victoria, Vicente-Rodriguez, Marta, Wood, Tobias C, Worrell, Courtney, Zajkowska, Zuzanna, Plath, Niels, Egebjerg, Jan, Eriksson, Hans, Gastambide, Francois, Adams, Karen Husted, Jeggo, Ross, Thomsen, Christian, Pederson, Jan Torleif, Campbell, Brian, Möller, Thomas, Nelson, Bob, Zorn, Stevin, O'Connor, Jason, Attenburrow, Mary Jane, Baird, Alison, Benjamin, Jithen, Clare, Stuart, Cowen, Philip, Huang, I-Shu (Dante), Hurley, Samuel, Jones, Helen, Lovestone, Simon, Mada, Francisca, Nevado-Holgado, Alejo, Oladejo, Akintayo, Ribe, Elena, Smith, Katy, Vyas, Anviti, Hughes, Zoe, Balice-Gordon, Rita, Duerr, James, Piro, Justin R, Sporn, Jonathan, Perry (PI), V Hugh, Cleal, Madeleine, Fryatt, Gemma, Gomez-Nicola, Diego, Mancuso, Renzo, Reynolds, Richard, Harrison, Neil A.

, Cercignani, Mara

, Clarke, Charlotte L, Hoskins, Elizabeth, Kohn, Charmaine, Murray, Rosemary, Wilcock, Lauren, Wlazly, Dominika, Mount, Howard, Jones, Declan N. C., Lovestone, Simon, Gomez-Nicola, Diego and Perry, V. Hugh 2019. CSF1R inhibitor JNJ-40346527 attenuates microglial proliferation and neurodegeneration in P301S mice. Brain 142 (10) , pp. 3243-3264. 10.1093/brain/awz241

Booth, Heather D.E., Wessely, Frank, Connor-Robson, Natalie

, Rinaldi, Federica, Vowles, Jane, Browne, Cathy, Evetts, Samuel G., Hu, Michele T., Cowley, Sally A., Webber, Caleb

and Wade-Martins, Richard 2019. RNA sequencing reveals MMP2 and TGFB1 downregulation in LRRK2 G2019S Parkinson's iPSC-derived astrocytes. Neurobiology of Disease 129 , pp. 56-66. 10.1016/j.nbd.2019.05.006

Collins, Stephan C., Mikhaleva, Anna, Vrcelj, Katarina, Vancollie, Valerie E., Wagner, Christel, Demeure, Nestor, Whitley, Helen, Kannan, Meghna, Balz, Rebecca, Anthony, Lauren F. E., Edwards, Andrew, Moine, Hervé, White, Jacqueline K., Adams, David J., Reymond, Alexandre, Lelliott, Christopher J., Webber, Caleb

and Yalcin, Binnaz 2019. Large-scale neuroanatomical study uncovers 198 gene associations in mouse brain morphogenesis. Nature Communications 10 (1) , 3465. 10.1038/s41467-019-11431-2

Lang, Charmaine, Campbell, Kieran R., Ryan, Brent J., Carling, Phillippa, Attar, Moustafa, Vowles, Jane, Perestenko, Olga V., Bowden, Rory, Baig, Fahd, Kasten, Meike, Hu, Michele T., Cowley, Sally A., Webber, Caleb

and Wade-Martins, Richard 2019. Single-cell sequencing of iPSC-Dopamine neurons reconstructs disease progression and identifies HDAC4 as a regulator of Parkinson cell phenotypes. Cell Stem Cell 24 (1) , 93-106.e6. 10.1016/j.stem.2018.10.023

Eddowes, Lucy A., Al-Hourani, Kinda, Ramamurthy, Narayan, Frankish, Jamie, Baddock, Hannah T, Sandor, Cynthia

, Ryan, John D., Fusco, Dahlene N., Arezes, João, Giannoulatou, Eleni, Boninsegna, Sara, Chevaliez, Stephane, Owens, Benjamin M. J., Sun, Chia Chi, Fabris, Paolo, Giordani, Maria Teresa, Martines, Diego, Vukicevic, Slobodan, Crowe, John, Lin, Herbert Y., Rehwinkel, Jan, McHugh, Peter J., Binder, Marco, Babitt, Jodie L., Chung, Raymond T., Lawless, Matthew W., Armitage, Andrew E., Webber, Caleb

, Klenerman, Paul and Drakesmith, Hal 2018. Antiviral activity of bone morphogenetic proteins and activins. Nature Microbiology 4 , pp. 339-351. 10.1038/s41564-018-0301-9

Volpato, Viola, Smith, James, Sandor, Cynthia

, Ried, Janina S., Baud, Anna, Handel, Adam, Newey, Sarah E., Wessely, Frank, Attar, Moustafa, Whiteley, Emma, Chintawar, Satyan, Verheyen, An, Barta, Thomas, Lako, Majlinda, Armstrong, Lyle, Muschet, Caroline, Artati, Aanna, Cusulin, Carlo, Christensen, Klaus, Patsch, Christoph, Sharma, Eshita, Nicod, Jerome, Brownjohn, Philip, Stubbs, Victoria, Heywood, Wendy E., Gissen, Paul, De Filippis, Roberta, Janssen, Katharina, Reinhardt, Peter, Adamski, Jerzy, Royaux, Ines, Peeters, Pieter J., Terstappen, Georg C., Graf, Martin, Livesey, Frederick J., Akerman, Colin J., Mills, Kevin, Bowden, Rory, Nicholson, George, Webber, Caleb

, Cader, M. Zameel and Lakics, Viktor 2018. Reproducibility of molecular phenotypes after long-term differentiation to uuman iPSC-derived neurons: a multi-site omics study. Stem Cell Reports 11 (4) , pp. 897-911. 10.1016/j.stemcr.2018.08.013

Yang, Yuanhao, Zhao, Huiying, Boomsma, Dorret I., Ligthart, Lannie, Belin, Andrea C., Smith, George Davey, Esko, Tonu, Freilinger, Tobias M., Hansen, Thomas Folkmann, Ikram, M. Arfan, Kallela, Mikko, Kubisch, Christian, Paraskevi, Christofidou, Strachan, David P., Wessman, Maija, Gormley, Padhraig, Anttila, Verneri, Winsvold, Bendik S., Palta, Priit, Esko, Tonu, Pers, Tune H., Farh, Kai-How, Cuenca-Leon, Ester, Muona, Mikko, Furlotte, Nicholas A., Kurth, Tobais, Ingason, Andres, McMahon, George, Ligthart, Lannie, Terwindt, Gisela M., Kallela, Mikko, Freilinger, Tobais M., Ran, Caroline, Gordon, Scott G., Stam, Anine H., Steinberg, Stacy, Borck, Guntram, Koiranen, Markku, Quaye, Lydia, Adams, Hieab H. H., Lehtimaki, Terho, Sarin, Antti-Pekka, Wedenoja, Juho, Hinds, David A., Buring, Julie E., Schürks, Markus, Ridker, Paul M., Hrafnsdottir, Maria Gudlaug, Stefansson, Hreinn, Ring, Susan M., Hottenga, Jouke-Jan, Penninx, Brenda W. J. H., Färkkilä, Markus, Artto, Ville, Kaunisto, Mari, Vepsäläinen, Salli, Malik, Rainer, Heath, Andrew C., Madden, Pamela A. F., Martin, Nicholas G., Montgomery, Grant W., Kurki, Mitja I., Kals, Mart, Mägi, Reedik, Pärn, Kalle, Hämäläinen, Eija, Huang, Hailiang, Byrnes, Andrea E., Franke, Lude, Huang, Jie, Stergiakouli, Evie, Lee, Phil H., Sandor, Cynthia

, Webber, Caleb

Anttila, Verneri, Bulik-Sullivan, Brendan, Finucane, Hilary K., Walters, Raymond K., Bras, Jose, Duncan, Laramie, Escott-Price, Valentina

, Falcone, Guido J., Gormley, Padhraig, Malik, Rainer, Patsopoulos, Nikolaos A., Ripke, Stephan, Wei, Zhi, Yu, Dongmei, Lee, Phil H., Turley, Patrick, Grenier-Boley, Benjamin, Chouraki, Vincent, Kamatani, Yoichiro, Berr, Claudine, Letenneur, Luc, Hannequin, Didier, Amouyel, Philippe, Boland, Anne, Deleuze, Jean-François, Duron, Emmanuelle, Vardarajan, Badri N., Reitz, Christiane, Goate, Alison M., Huentelman, Matthew J., Kamboh, M. Ilyas, Larson, Eric B., Rogaeva, Ekaterina, St George-Hyslop, Peter, Hakonarson, Hakon, Kukull, Walter A., Farrer, Lindsay A., Barnes, Lisa L., Beach, Thomas G., Demirci, F. Yesim, Head, Elizabeth, Hulette, Christine M., Jicha, Gregory A., Kauwe, John S.K., Kaye, Jeffrey A., Leverenz, James B., Levey, Allan I., Lieberman, Andrew P., Pankratz, Vernon S., Poon, Wayne W., Quinn, Joseph F., Saykin, Andrew J., Schneider, Lon S., Smith, Amanda G., Sonnen, Joshua A., Stern, Robert A., Van Deerlin, Vivianna M., Van Eldik, Linda J., Harold, Denise

, Russo, Giancarlo, Rubinsztein, David C., Bayer, Antony

, Tsolaki, Magda, Proitsi, Petra, Fox, Nick C., Hampel, Harald, Owen, Michael J.

, Mead, Simon, Passmore, Peter, Morgan, Kevin, Nöthen, Markus M., Rossor, Martin, Lupton, Michelle K., Hoffmann, Per, Kornhuber, Johannes, Lawlor, Brian, McQuillin, Andrew,

, ,

, , ,

and

2018. Analysis of shared heritability in common disorders of the brain. Science 360 (6395) , eaap8757. 10.1126/science.aap8757

Nash, Anthony, Holgado, Alejo J. Nevado, Lovestone, Simon, Cader, M. Zameel and Webber, Caleb

2018. Headache and type 2 diabetes association: a US national ambulatory case-control study. [Online]. bioRxiv. Available at: https://doi.org/10.1101/336586

Sandor, Cynthia

, Beer, Nicola L. and Webber, Caleb

2017. Diverse type 2 diabetes genetic risk factors functionally converge in a phenotype-focused gene network. PLoS Computational Biology 13 (10) , e1005816. 10.1371/journal.pcbi.1005816

Webber, Caleb

2017. Epistasis in neuropsychiatric disorders. Trends in Genetics 33 (4) , pp. 256-265. 10.1016/j.tig.2017.01.009

Baud, Anna, Wessely, Frank, Mazzacuva, Francesca, McCormick, James, Camuzeaux, Stephane, Heywood, Wendy E., Little, Daniel, Vowles, Jane, Tuefferd, Marianne, Mosaku, Olukunbi, Lako, Majlinda, Armstrong, Lyle, Webber, Caleb

, Cader, M. Zameel, Peeters, Pieter, Gissen, Paul, Cowley, Sally A. and Mills, Kevin 2017. Multiplex high-throughput targeted proteomic assay to identify induced pluripotent stem cells. Analytical Chemistry 89 (4) , pp. 2440-2448. 10.1021/acs.analchem.6b04368

Sandor, Cynthia

, Robertson, Paul, Lang, Charmaine, Heger, Andreas, Booth, Heather, Vowles, Jane, Witty, Lorna, Bowden, Rory, Hu, Michele, Cowley, Sally A., Wade-Martins, Richard and Webber, Caleb

2017. Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease. Human Molecular Genetics 26 (3) , pp. 552-566. 10.1093/hmg/ddw412

Sandor, Cynthia

, Honti, Frantisek, Haerty, Wilfried, Szewczyk-Krolikowski, Konrad, Tomlinson, Paul, Evetts, Sam, Millin, Stephanie, Keane, Thomas, McCarthy, Shane A., Durbin, Richard, Talbot, Kevin, Hu, Michele, Webber, Caleb

, Ponting, Chris P. and Wade-Martins, Richard 2017. Whole-exome sequencing of 228 patients with sporadic Parkinson's disease. Scientific Reports 7 , 41188. 10.1038/srep41188

Gormley, Padhraig, Anttila, Verneri, Winsvold, Bendik S., Palta, Proot, Esko, Tonu, Pers, Tune H., Farh, Kai-How, Cuenca-Leon, Ester, Muona, Mikko, Furlotte, Nicholas A., Kurth, Tobias, Ingason, Andres, McMahon, George, Ligthart, Lannie, Terwindt, Gisela M., Kallela, Mikko, Freilinger, Tobias M., Ran, Caroline, Gordon, Scott G., Stam, Annie H., Steinberg, Stacy, Borck, Guntram, Koiranen, Markku, Quaye, Lydia, Adams, Hieab H. H., Lehtimäki, Terho, Sarin, Antti-Pekka, Wedenoja, Juho, Hinds, David A., Buring, Julie E., Schürks, Markus, Ridker, Paul M., Gudlaug Hrafnsdottir, Maria, Stefansson, Hreinn, Ring, Susan M., Hottenga, Jouke-Jan, Penninx, Brenda W. J. H., Färkkilä, Markus, Artto, Ville, Kaunisto, Mari, Vepsäläinen, Salli, Malik, Rainer, Heath, Andrew C., Madden, Pamela A. F., Martin, Nicholas G., Montgomery, Grant W., Kurki, Mitja I., Kals, Mart, Mägi, Reedik, Pärn, Kalle, Hämäläinen, Eija, Huang, Hailiang, Byrnes, Andrea E., Franke, Lude, Huang, Jie, Stergiakouli, Evie, Lee, Phil H., Sandor, Cynthia

, Webber, Caleb

, Cader, Zameel, Mullter-Myhsok, Bertram, Schreiber, Stefan, Meitinger, Thomas, Eriksson, Johan G., Salomaa, Veikko, Heikkilä, Kauko, Loehrer, Elizabeth, Uitterlinden, Andre, Hofman, Albert, van Duijn, Cornelia M., Cherkas, Lynn, Pedersen, Linda M., Stubhaug, Audun, Nielsen, Christopher S., Männikkö, Minna, Mihailov, Evelin, Milani, Liki, Göbel, Hartmut, Esserlind, Ann-Louise, Christensen, Anne Francke, Hansen, Thomas Folkmann, Werge, Thomas, International Headache Genetics Consortium, Kaprio, Jaakko, Aromaa, Arpo J., Raitakari, Olli, Ikram, M. Arfan, Spector, Tim, Järvelin, Marjo-Riitta, Metspalu, Andres, Kubisch, Christian, Strachan, David P., Ferrari, Michel D., Belin, Andrea C., Dichgans, Martin, Wessman, Jaiha, van den Maagdenberg, Arn M. J. M., Zwart, John-Anker, Boomsma, Dorret I., Smith, George Davey, Stefansson, Kari, Eriksson, Nicholas, Daly, Mark J., Neale, Benjamin M., Olesen, Jes, Chasman, Daniel I., Nyholt, Dale R. and Palotie, Aarno 2016. Corrigendum: Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine. Nature Genetics 48 (10) , p. 1296. 10.1038/ng1016-1296c

Gormley, Padhraig, Anttila, Verneri, Winsvold, Bendik S., Palta, Priit, Esko, Tonu, Pers, Tune H., Farh, Kai-How, Cuenca-Leon, Ester, Muona, Mikko, Furlotte, Nicholas A., Kurth, Tobais, Ingason, Andres, McMahon, George, Ligthart, Lannie, Terwindt, Gisela M., Kallela, Mikko, Freilinger, Tobias M., Ran, Caroline, Gordon, Scott G., Stam, Anine H., Steinberg, Stacy, Borck, Guntram, Koiranen, Markku, Quaye, Lydia, Adams, Hieab H. H., Lehtimäki, Terho, Sarin, Anti-Pekka, Wedenoja, Juho, Hinds, David A., Buring, Julie E., Schürks, Markus, Ridker, Paul M., Hrafnsdottir, Maria Gudlaug, Stefansson, Hreinn, Ring, Susan M., Hottenga, Jouke-Jan, Penninx, Brenda W. J. H., Färkkilä, Markus, Artto, Ville, Mari, Kaunisto, Vepsäläinen, Salli, Malik, Rainer, Heath, Andrew C., Madden, Pamela A. F., Martin, Nicholas G., Montgomery, Grant W., Kurki, Mitja I., Kals, Mart, Mägi, Reedik, Pärn, Kalle, Hämäläinen, Eija, Huang, Hailiang, Byrnes, Andrea E., Franke, Lude, Huang, Jie, Stergiakouli, Evie, Lee, Phil H., Sandor, Cynthia

, Webber, Caleb

, Cader, Zameel, Muller-Myhsok, Bertram, Schreiber, Stefan, Meitinger, Thomas, Eriksson, Johan G., Salomaa, Veikko, Heikkilä, Kauko, Loehrer, Elizabeth, Uitterlinden, Andre G., Hofman, Albert, van Duijn, Cornelia M., Cherkas, Lynn, Pedersen, Linda, Stubhaug, Audun, Nielsen, Christopher S., Männikkö, Minna, Mihailov, Evelin, Milani, Liki, Göbel, Hartmut, Esserlind, Ann-Louise, Christensen, Anne Francke, Hansen, Thomas Folkmann, Wege, Thomas, International Headache Genetics Consortium, Kaprio, Jaakko, Aromaa, Arpo J., Raitakari, Olli, Ikram, M. Arfan, Spector, Tim, Järvelin, Marjo-Riitta, Metspalu, Andres, Kubisch, Christian, Strachan, David P., Ferrari, Michel D., Belin, Andrea C., Dichgans, Martin, Wessman, Maija, van den Maagdenberg, Arn M. J. M., Zwart, John-Anker, Boomsma, Dorret I., Smith, George Davey, Stefansson, Kari, Eriksson, Nicholas, Daly, Mark J., Neale, Benjamin M., Olesen, Jes, Chasman, Daniel I., Nyhol, Dale R. and Palotie, Aarno 2016. Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine. Nature Genetics 48 (8) , pp. 856-866. 10.1038/ng.3598

Kochinke, Korinna, Zweier, Christiane, Nijhof, Bonnie, Fenckova, Michaela, Cizek, Pavel, Honti, Frank, Keerthikumar, Shivakumar, Oortveld, Merel A. W., Kleefstra, Tjitske, Kramer, Jamie M., Webber, Caleb

, Huynen, Martijn A. and Schenck, Annette 2016. Systematic phenomics analysis deconvolutes genes mutated in intellectual disability into biologically coherent modules. American Journal of Human Genetics 98 (1) , pp. 149-164. 10.1016/j.ajhg.2015.11.024

Tan, Jennifer Y., Sirey, Tamara, Honti, Frantisek, Graham, Bryony, Piovesan, Allison, Merkenschlager, Matthias, Webber, Caleb

, Ponting, Chris P. and Marques, Ana C. 2015. Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells. Genome Research 25 (9) , 1410.1. 10.1101/gr.196568.115

Steinberg, Julia, Honti, Frantisek, Meader, Stephen and Webber, Caleb

2015. Haploinsufficiency predictions without study bias. Nucleic Acids Research 43 (15) , e101. 10.1093/nar/gkv474

Andrews, Tallulah, Honti, Frantisek, Pfundt, Rolph, De Leeuw, Nicole, Hehir-Kwa, Jayne, Silfhout, Anneke Vulto-cvan, De Vries, Bert and Webber, Caleb

2015. The clustering of functionally related genes contributes to CNV-mediated disease. Genome Research 25 (6) , pp. 802-813. 10.1101/gr.184325.114

Tan, Jennifer Y., Sirey, Tamara, Honti, Frantisek, Graham, Byrony, Piovesan, Allison, Merkenschlager, Matthias, Webber, Caleb

, Ponting, Chris P. and Marques, Ana C. 2015. Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells. Genome Research 25 (5) , pp. 655-666. 10.1101/gr.181974.114

Grice, Stuart J., Liu, Ji-Long and Webber, Caleb

2015. Synergistic interactions between Drosophila orthologues of genes spanned by De Novo human CNVs support multiple-hit models of autism. PLoS Genetics 11 (3) , e1004998. 10.1371/journal.pgen.1004998

Andrews, Tallulah, Meader, Stephen, Vulto-van Silfhout, Anneke, Taylor, Avigail, Steinberg, Juila, Hehir-Kwa, Jayne, Pfundt, Rolph, de Leeuw, Nicole, de Vries, Bert B.A. and Webber, Caleb

2015. Gene networks underlying convergent and pleiotropic phenotypes in a large and systematically-phenotyped cohort with heterogeneous developmental disorders. PLoS Genetics 11 (3) , e1005012. 10.1371/journal.pgen.1005012

Taylor, Avigail, Steinberg, Julia and Webber, Caleb

2015. Duplications in ADHD patients harbour neurobehavioural genes that are co-expressed with genes associated with hyperactivity in the mouse. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 168 (2) , pp. 97-107. 10.1002/ajmg.b.32285

Taylor, Avigail, Steinberg, Julia, Andrews, Tallulah S. and Webber, Caleb

2015. GeneNet toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks. Bioinformatics 31 (3) , pp. 442-444. 10.1093/bioinformatics/btu669

Honti, Frantisek, Meader, Stephen and Webber, Caleb

2014. Unbiased functional clustering of gene variants with a phenotypic-linkage network. PLoS Computational Biology 10 (8) , e1003815. 10.1371/journal.pcbi.1003815

Ferry, Quentin, Steinberg, Julia, Webber, Caleb

, FitzPatrick, David R., Ponting, Chris P., Zisserman, Andrew and Nell?ker, Christoffer 2014. Diagnostically relevant facial gestalt information from ordinary photos. eLife 2014 (3) , e02020. 10.7554/eLife.02020.001

Robinson, Peter N. and Webber, Caleb

2014. Phenotype ontologies and cross-species analysis for translational research. PLoS Genetics 10 (4) , e1004268. 10.1371/journal.pgen.1004268

Vulto-van Silfhout, Anneke T., Hehir-Kwa, Jayne Y., van Bon, Bregje W. M., Schuurs-Hoeijmakers, Janneke H M., Meader, Stephen, Hellebrekers, Claudia J. M., Thoonen, Ilse J. M., de Brouwer, Arjan P. M., Brunner, Han G., Webber, Caleb

, Pfundt, Rolph, de Leeuw, Nicole and De Vries, Bert B. A. 2013. Clinical significance of de novo and inherited copy-number variation. Human Mutation 34 (12) , pp. 1679-1687. 10.1002/humu.22442

Steinberg, Julia and Webber, Caleb

2013. The roles of FMRP-regulated genes in autism spectrum disorder: single- and multiple-hit genetic etiologies. American Journal of Human Genetics 93 (5) , pp. 825-839. 10.1016/j.ajhg.2013.09.013

Brandler, William M., Morris, Andrew P., Evans, David M., Scerri, Thomas S., Kemp, John P., Timpson, Nicholas J., St Pourcain, Beate, Smith, George Davey, Ring, Susan M., Stein, John, Monaco, Anthony P., Talcott, Joel B., Fisher, Simon E., Webber, Caleb

and Paracchini, Silvia 2013. Common variants in left/right asymmetry genes and pathways are associated with relative hand skill. PLoS Genetics 9 (9) , e1003751. 10.1371/journal.pgen.1003751

Heger, Andreas, Webber, Caleb

, Goodson, Martin, Ponting, Chris P. and Lunter, Gerton 2013. GAT: A simulation framework for testing the association of genomic intervals. Bioinformatics 29 (16) , pp. 2046-2048. 10.1093/bioinformatics/btt343

Noh, Hyun Ji, Ponting, Chris P., Boulding, Hannah C., Meader, Stephen, Betancur, Catalina, Buxbaum, Joseph D., Pinto, Dalila, Marshall, Christian R., Lionel, Anath C., Scherer, Stephen W. and Webber, Caleb

2013. Network topologies and convergent aetiologies arising from deletions and duplications observed in individuals with autism. PLoS Genetics 9 (6) , e1003523. 10.1371/journal.pgen.1003523

Hoerder-Suabedissen, Anna, Oeschger, Franziska M., Krishnan, Michelle L., Belgard, T. Grant, Wang, Wei Zhi, Lee, Sheena, Webber, Caleb

, Petretto, Enrico, Edwards, A. David and Molnár, Zoltán 2013. Expression profiling of mouse subplate reveals a dynamic gene network and disease association with autism and schizophrenia. Proceedings of the National Academy of Sciences 110 (9) , pp. 3555-3560. 10.1073/pnas.1218510110

Boulding, Hannah and Webber, Caleb

2012. Large-scale objective association of mouse phenotypes with human symptoms through structural variation identified in patients with developmental disorders. Human Mutation 33 (5) , pp. 874-883. 10.1002/humu.22069

Webber, Caleb

2011. Functional enrichment analysis with structural variants: pitfalls and strategies. Cytogenetic and Genome Research 135 (3-4) , pp. 277-285. 10.1159/000331670

Mills, Ryan E., Pittard, W. Stephen, Mullaney, Julienne M., Farooq, Umar, Creasy, Todd H., Mahurkar, Anup A., Kemeza, David M., Strassler, Daniel S., Ponting, Chris P., Webber, Caleb

and Devine, Scott E. 2011. Natural genetic variation caused by small insertions and deletions in the human genome. Genome Research 21 (6) , pp. 830-839. 10.1101/gr.115907.110

Shaikh, Tamim H., Haldeman-Englert, Chad, Geiger, Elizabeth A., Ponting, Chris P. and Webber, Caleb

2011. Genes and biological processes commonly disrupted in rare and heterogeneous developmental delay syndromes. Human Molecular Genetics 20 (5) , pp. 880-893. 10.1093/hmg/ddq527

Agam, Avigail, Yalcin, Binnaz, Bhomra, Amarjit, Cubin, Matthew, Webber, Caleb

, Holmes, Christopher, Flint, Jonathan and Mott, Richard 2010. Elusive copy number variation in the mouse genome. PLoS ONE 5 (9) , pp. 1-13. 10.1371/journal.pone.0012839

Pinto, Dalila, Pagnamenta, Alistair T., Klei, Lambertus, Anney, Richard

, Merico, Daniele, Regan, Regina, Conroy, Judith, Magalhaes, Tiago R., Correia, Catarina, Abrahams, Brett S., Almeida, Joana, Bacchelli, Elena, Bader, Gary D., Bailey, Anthony J., Baird, Gillian, Battaglia, Agatino, Berney, Tom, Bolshakova, Nadia, Boelte, Sven, Bolton, Patrick F., Bourgeron, Thomas, Brennan, Sean, Brian, Jessica, Bryson, Susan E., Carson, Andrew R., Casallo, Guillermo, Casey, Jillian, Chung, Brian H. Y., Cochrane, Lynne, Corsello, Christina, Crawford, Emily L., Crossett, Andrew, Cytrynbaum, Cheryl, Dawson, Geraldine, de Jonge, Maretha, Delorme, Richard, Drmic, Irene, Duketis, Eftichia, Duque, Frederico, Estes, Annette, Farrar, Penny, Fernandez, Bridget A., Folstein, Susan E., Fombonne, Eric, Freitag, Christine M., Gilbert, John, Gillberg, Christopher, Glessner, Joseph T., Goldberg, Jeremy, Green, Andrew, Green, Jonathan, Guter, Stephen J., Hakonarson, Hakon, Heron, Elizabeth A., Hill, Matthew, Holt, Richard, Howe, Jennifer L., Hughes, Gillian, Hus, Vanessa, Igliozzi, Roberta, Kim, Cecilia, Klauck, Sabine M., Kolevzon, Alexander, Korvatska, Olena, Kustanovich, Vlad, Lajonchere, Clara M., Lamb, Janine A., Laskawiec, Magdalena, Leboyer, Marion, Le Couteur, Ann, Leventhal, Bennett L., Lionel, Anath C., Liu, Xiao-Qing, Lord, Catherine, Lotspeich, Linda, Lund, Sabata C., Maestrini, Elena, Mahoney, William, Mantoulan, Carine, Marshall, Christian R., McConachie, Helen, McDougle, Christopher J., McGrath, Jane, McMahon, William M., Merikangas, Alison, Migita, Ohsuke, Minshew, Nancy J., Mirza, Ghazala K., Munson, Jeff, Nelson, Stanley F., Noakes, Carolyn, Noor, Abdul, Nygren, Gudrun, Oliveira, Guiomar, Papanikolaou, Katerina, Parr, Jeremy R., Parrini, Barbara, Paton, Tara, Pickles, Andrew, Pilorge, Marion, Piven, Joseph, Ponting, Chris P., Posey, David J., Poustka, Annemarie, Poustka, Fritz, Prasad, Aparna, Ragoussis, Jiannis, Renshaw, Katy, Rickaby, Jessica, Roberts, Wendy, Roeder, Kathryn, Roge, Bernadette, Rutter, Michael L., Bierut, Laura J., Rice, John P., Salt, Jeff, Sansom, Katherine, Sato, Daisuke, Segurado, Ricardo, Sequeira, Ana F., Senman, Lili, Shah, Naisha, Sheffield, Val C., Soorya, Latha, Sousa, Ines, Stein, Olaf, Sykes, Nuala, Stoppioni, Vera, Strawbridge, Christina, Tancredi, Raffaella, Tansey, Katherine E., Thiruvahindrapduram, Bhooma, Thompson, Ann P., Thomson, Susanne, Tryfon, Ana, Tsiantis, John, Van Engeland, Herman, Vincent, John B., Volkmar, Fred, Wallace, Simon, Wang, Kai, Wang, Zhouzhi, Wassink, Thomas H., Webber, Caleb

, Weksberg, Rosanna, Wing, Kirsty, Wittemeyer, Kerstin, Wood, Shawn, Wu, Jing, Yaspan, Brian L., Zurawiecki, Danielle, Zwaigenbaum, Lonnie, Buxbaum, Joseph D., Cantor, Rita M., Cook, Edwin H., Coon, Hilary, Cuccaro, Michael L., Devlin, Bernie, Ennis, Sean, Gallagher, Louise, Geschwind, Daniel H., Gill, Michael, Haines, Jonathan L., Hallmayer, Joachim, Miller, Judith, Monaco, Anthony P., Nurnberger, John I., Paterson, Andrew D., Pericak-Vance, Margaret A., Schellenberg, Gerard D., Szatmari, Peter, Vicente, Astrid M., Vieland, Veronica J., Wijsman, Ellen M., Scherer, Stephen W., Sutcliffe, James S. and Betancur, Catalina 2010. Functional impact of global rare copy number variation in autism spectrum disorders. Nature 466 (7304) , pp. 368-372. 10.1038/nature09146

Hehir-Kwa, Jayne Y., Wieskamp, Nienke, Webber, Caleb

, Pfundt, Rolph, Brunner, Han G., Gilissen, Christian, de Vries, Bert B. A., Ponting, Chris P. and Veltman, Joris A. 2010. Accurate distinction of pathogenic from benign CNVs in mental retardation. PLoS Computational Biology 6 (4) , e1000752. 10.1371/journal.pcbi.1000752

Webber, Caleb

, Hehir-Kwa, Jayne Y., Nguyen, Duc-Quang, De Vries, Bert B. A., Veltman, Joris A. and Ponting, Chris P. 2009. Forging links between human mental retardation-associated CNVs and mouse gene knockout models. PLoS Genetics 5 (6) , e1000531. 10.1371/journal.pgen.1000531

Nguyen, Duc-Quang, Webber, Caleb

, Hehir-Kwa, Jayne, Pfundt, Rolph, Veltman, Joris and Ponting, Chris P. 2008. Reduced purifying selection prevails over positive selection in human copy number variant evolution. Genome Research 18 (11) , pp. 1711-1723. 10.1101/gr.077289.108

Walsh, Thomas P., Webber, Caleb

, Searle, Stephen, Sturrock, Shane S. and Barton, Geoffrey J. 2008. SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Research 36 (Supple) , W25-W29. 10.1093/nar/gkn320

Warren, Wesley C., Hillier, LaDeana W., Marshall Graves, Jennifer A., Birney, Ewan, Ponting, Chris P., Grützner, Frank, Belov, Katherine, Miller, Webb, Clarke, Laura, Chinwalla, Asif T., Yang, Shiaw-Pyng, Heger, Andreas, Locke, Devin P., Miethke, Pat, Waters, Paul D., Veyrunes, Frédéric, Fulton, Lucinda, Fulton, Bob, Graves, Tina, Wallis, John, Puente, Xose S., López-Otín, Carlos, Ordóñez, Gonzalo R., Eichler, Evan E., Chen, Lin, Cheng, Ze, Deakin, Jenine E., Aslop, Amber, Thompson, Katherine, Kirby, Patrick, Papenfuss, Anthony T., Wakefield, Matthew J., Olender, Tsviya, Lancet, Doron, Huttley, Gavin A., Smit, Arian F. A., Pask, Andrew, Temple-Smith, Peter, Batzer, Mark A., Walker, Jerilyn A., Konkel, Miriam K., Harris, Robert S., Whittington, Camilla M., Wong, Emily S. W., Gemmell, Neil J., Buschiazzo, Emmanuel, Vargas Jentzsch, Iris M., Merkel, Angelika, Schmitz, Juergen, Zemann, Anja, Churakov, Gennady, Kriegs, Jan Ole, Brosius, Juergen, Murchison, Elizabeth P., Sachidanandam, Ravi, Smith, Carly, Hannon, Gregory J., Tsend-Ayush, Enkhjargal, McMillan, Daniel, Attenborough, Rosalind, Rens, Willem, Ferguson-Smith, Malcolm, Lefèvre, Christophe M., Sharp, Julie A., Nicholas, Kevin R., Ray, David A., Kube, Michael, Reinhardt, Richard, Pringle, Thomas H., Taylor, James, Jones, Russell C., Nixon, Brett, Dacheux, Jean-Louis, Niwa, Hitoshi, Sekita, Yoko, Huang, Xiaoqiu, Stark, Alexander, Kheradpour, Pouya, Kellis, Manolis, Flicek, Paul, Chen, Yuan, Webber, Caleb

, Hardison, Ross, Nelson, Joanne, Hallsworth-Pepin, Kym, Delehaunty, Kim, Markovic, Chris, Minx, Pat, Feng, Yucheng, Kremitzki, Colin, Mitreva, Makedonka, Glasscock, Jarret, Wylie, Todd, Wohldmann, Patricia, Thiru, Prathapan, Nhan, Michael N., Pohl, Craig S., Smith, Scott M., Hour, Shungfeng, renfree, Marilyn B., Mardis, Elaine R. and Wilson, Richard K. 2008. Genome analysis of the platypus reveals unique signatures of evolution. Nature 453 , pp. 175-183. 10.1038/nature06936

Goodstadt, Leo, Heger, Andreas, Webber, Caleb

and Ponting, Chris P. 2007. An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes. Genome Research 17 (7) , pp. 969-981. 10.1101/gr.6093907

Mikkelsen, Tarjei S., Wakefield, Mattew J., Aken, Bronwen, Amemiya, Chris T., Chang, Jean L., Duke, Sahannon, Garber, Manuel, Gentles, Andrew J., Goodstadt, Leo, Heger, Andreas, Jurka, Jerzy, Kamal, Michael, Mauceli, Evan, Searle, Stephen M. J., Sharpe, Ted, Baker, Michelle L., Batzer, Mark A., Benos, Panayiotis, Belov, Katherine, Clamp, Michele, Cook, April, Cuff, James, Das, Radhika, Davidow, Lance, Deakin, Janine E., Fazzari, Melissa J., Glass, Jacob L., Grabherr, Manfred, Greally, John M., Gu, Wanjun, Hore, Timothy A., Huttley, Gavin A., Kleber, Michael, Jirtle, Randy L., Koina, Edda, Lee, Jeannie T., Mahony, Shaun, Marra, Marco A., Miller, Robert D., Nicholls, Robert D., Oda, Mayumi, Papenfuss, Anthony T., Parra, Zuly E., Pollock, David D., Ray, David A., Schein, Jacqueline E., Speed, Terence P., Thompson, Katherine, VandeBerg, John L., Wade, Claire M., Walker, Jerilyn A., Waters, Paul D., Webber, Caleb

, Weidman, Jennifer R., Xie, Xiaohui, Zody, Michael C., Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team, Marshall Graves, Jennier A., Ponting, Chris P., Breen, Matthew, Samollow, Paul B., Lander, Eric S. and Lindbald-Toh, Kerstin 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447 (7141) , pp. 167-177. 10.1038/nature05805

Nguyen, Duc-Quang, Webber, Caleb

and Ponting, Chris P. 2006. Bias of selection on human copy-number variants. PLoS Genetics 2 (2) , e20. 10.1371/journal.pgen.0020020

Webber, Caleb

and Ponting, Chris P. 2005. Hotspots of mutation and breakage in dog and human chromosomes. Genome Research 15 (12) , pp. 1787-1797. 10.1101/gr.3896805

Lindblad-Toh, Kerstin, Wade, Claire M., Mikkelsen, Tarjei S., Karlsson, Elinor K., Jaffe, David B., Kamal, Michael, Clamp, Michele, Chang, Jean L., Kulbokas III, Edward J., Zody, Michael C., Mauceli, Evan, Xie, Xiaohui, Breen, Matthew, Wayne, Robert K., Ostrander, Elaine A., Ponting, Chris P., Galibert, Francis, Smith, Douglas R., DeJong, Pieter J., Kirkness, Ewen, Alvarez, Pablo, Biagi, Tara, Brockman, William, Butler, Jonathan, Chin, Chee-Wye, Cook, April, Cuff, James, Daly, Mark J., DeCaprio, David, Gnerre, Sante, Grabherr, Manfred, Kellis, Manolis, Kleber, Michael, Bardeleben, Carolyne, Goodstadt, Leo, Heger, Andreas, Hitte, Christophe, Kim, Lisa, Koepfli, Klaus-Peter, Parker, Heidi G., Pollinger, John P., Searle, Stephen M. J., Sutter, Nathan B., Thomas, Rachael, Webber, Caleb

and Lander, Eric S. Lander 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438 (7069) , pp. 803-819. 10.1038/nature04338

Hiller, LaDeana W., International Chicken Genome Sequencing Consortium and Webber, Caleb

2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432 , pp. 659-716. 10.1038/nature03154

Wong, Gane Ka-Shu, Liu, Bin, Wang, Jun, Zhang, Yong, Yang, Xu, Zhang, Zengjin, Meng, Qingshun, Zhou, Jun, Li, Dawei, Zhang, Jingjing, Ni, Peixiang, Li, Songgang, Ran, Longhua, Li, Heng, Zhang, Jianguo, Li, Ruiqiang, Li, Shengting, Zheng, Hongkun, Lin, Wei, Li, Guangyun, Wang, Xioaling, Zhao, Wenming, Li, Jun, Ye, Chen, Dai, Mmingtao, Ruan, Jue, Zhou, Yan, Li, Yuanzhe, He, Ximiao, Zhang, Yunze, Wang, Jing, Huang, Xingang, Tong, Wei, Chen, Jie, Ye, Jia, Chen, Chen, Wei, Ning, Li, Guoqing, Dong, Le, Lan, Fengdi, Sun, Yongqiao, Zhang, Zhenpeng, Yang, Zheng, Yu, Yingpu, Huang, Yanqing, He, Dandan, Xi, Yan, Wei, Dong, Qi, Qiuhui, Li, Wenjie, Shi, Jianping, Wang, Miaoheng, Xie, Fei, Wang, Jianjun, Zhang, Xiaowei, Wang, Pei, Zhao, Yiqiang, Li, Ning, Yang, Ning, Dong, Wei, Hu, Songnian, Zeng, Changqing, Zheng, Weimou, Hao, Bailin, Hillier, LaDeana W., Yang, Shuaw-Pyng, Warren, Wesley C., Wilson, Richard K., Brandström, Mikael, Ellegren, Hans, Crooijmans, Richard P. M. A., van der Poel, Jan J., Bovenhuis, Henk, Groenen, Martien A. M., Ovcharenko, Ivan, Gordon, Laurie, Stubbs, Lisa, Lucas, Susan, Glavina, Tijana, Aerts, Andrea, Kaiser, Pete, Rothwell, Lisa, Young, John R., Rogers, Sally, Walker, Brian A., van Hateren, Andy, Kaufman, Jim, Bumstead, Nat, Lamont, Susan J., Zhou, Huaijun, Hocking, Paul M., Morrice, Dvaid, de Koning, Dirk-Jan, Law, Andy, Bartley, Neil, Burt, David W., Hunt, Henry, Cheng, Hans H., Gunnarsson, Ulrika, Wahlberg, Per, Andersson, Leif, Kindlund, Ellen, Tammi, Martti T., Andersson, Björn, Webber, Caleb

, Ponting, Chris P., Overton, Ian M., Boardman, Paul E., Tang, Haizhou, Hubbard, Simon J., Wilson, Stuart A., Yu, Jun, Wang, Jian and Yang, HuanMing 2004. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 432 (7018) , pp. 717-722. 10.1038/nature03156

Abdellah, Zahra, International Human Genome Sequencing Consortium and Webber, Caleb

2004. Finishing the euchromatic sequence of the human genome. Nature 431 , pp. 931-945. 10.1038/nature03001

Webber, Caleb

and Ponting, Chris P. 2004. Genes and homology. Current Biology 14 (9) , R332-R333. 10.1016/j.cub.2004.04.016

Gibbs, Richard A., Weinstock, George M., Metzker, Michael L., Muzny, Donna M., Sodergren, Erica J., Scherer, Steven, Scott, Graham, Steffen, David, Worley, Kim C., Burch, Paula E., Okwuonu, Geoffrey, Hines, Sandra, Lewis, Lora, DeRamo, Christine, Delgado, Oliver, Dugan-Rocha, Shannon, Miner, George, Morgan, Margaret, Hawes, Alicia, Gill, Rachel, Celera, A., Holt, Robert A., Adams, Mark D., Amanatides, Peter G., Baden-Tillson, Holly, Barnstead, Mary, Chin, Soo, Evans, Cheryl A., Ferriera, Steve, Fosler, Carl, Glodek, Anna, Gu, Zhiping, Jennings, Don, Kraft, Cheryl L., Nguyen, Trixie, Pfannkoch, Cynthia M., Sitter, Cynthia, Sutton, Granger G., Venter, J. Craig, Woodage, Trevor, Smith, Douglas, Lee, Hong-Mei, Gustafson, Erik, Cahill, Patrick, Kana, Arnold, Doucette-Stamm, Lynn, Weinstock, Keith, Fechtel, Kim, Weiss, Robert B., Dunn, Diane M., Green, Eric D., Blakesley, Robert W., Bouffard, Gerard G., de Jong, Pieter J., Osoegawa, Kazutoyo, Zhu, Baoli, Marra, Marco, Schein, Jacqueline, Bosdet, Ian, Fjell, Chris, Jones, Steven, Krzywinski, Martin, Mathewson, Carrie, Siddiqui, Asim, Wye, Natasja, McPherson, John, Zhao, Shaying, Fraser, Claire M., Shetty, Jyoti, Shatsman, Sofiya, Geer, Keita, Chen, Yixin, Abramzon, Sofyia, Nierman, William C., Gibbs, Richard A., Weinstock, George M., Havlak, Paul H., Chen, Rui, James Durbin, K., Egan, Amy, Ren, Yanru, Song, Xing-Zhi, Li, Bingshan, Liu, Yue, Qin, Xiang, Cawley, Simon, Weinstock, George M., Worley, Kim C., Cooney, A. J., Gibbs, Richard A., D'Souza, Lisa M., Martin, Kirt, Qian Wu, Jia, Gonzalez-Garay, Manuel L., Jackson, Andrew R., Kalafus, Kenneth J., McLeod, Michael P., Milosavljevic, Aleksandar, Virk, Davinder, Volkov, Andrei, Wheeler, David A., Zhang, Zhengdong, Bailey, Jeffrey A., Eichler, Evan E., Tuzun, Eray, Birney, Ewan, Mongin, Emmanuel, Ureta-Vidal, Abel, Woodwark, Cara, Zdobnov, Evgeny, Bork, Peer, Suyama, Mikita, Torrents, David, Alexandersson, Marina, Trask, Barbara J., Young, Janet M., Smith, Douglas, Huang, Hui, Fechtel, Kim, Wang, Huajun, Xing, Heming, Weinstock, Keith, Daniels, Sue, Gietzen, Darryl, Schmidt, Jeanette, Stevens, Kristian, Vitt, Ursula, Wingrove, Jim, Camara, Francisco, Mar Albà, M., Abril, Josep F., Guigo, Roderic, Smit, Arian, Dubchak, Inna, Rubin, Edward M., Couronne, Olivier, Poliakov, Alexander, Hübner, Norbert, Ganten, Detlev, Goesele, Claudia, Hummel, Oliver, Kreitler, Thomas, Lee, Young-Ae, Monti, Jan, Schulz, Herbert, Zimdahl, Heike, Himmelbauer, Heinz, Lehrach, Hans, Jacob, Howard J., Bromberg, Susan, Gullings-Handley, Jo, Jensen-Seaman, Michael I., Kwitek, Anne E., Lazar, Jozef, Pasko, Dean, Tonellato, Peter J., Twigger, Simon, Ponting, Chris P., Duarte, Jose M., Rice, Stephen, Goodstadt, Leo, Beatson, Scott A., Emes, Richard D., Winter, Eitan E., Webber, Caleb

, Brandt, Petra, Nyakatura, Gerald, Adetobi, Margaret, Chiaromonte, Francesca, Elnitski, Laura, Eswara, Pallavi, Hardison, Ross C., Hou, Minmei, Kolbe, Diana, Makova, Kateryna, Miller, Webb, Nekrutenko, Anton, Riemer, Cathy, Schwartz, Scott, Taylor, James, Yang, Shan, Zhang, Yi, Lindpaintner, Klaus, Andrews, T. Dan, Caccamo, Mario, Clamp, Michele, Clarke, Laura, Curwen, Valerie, Durbin, Richard, Eyras, Eduardo, Searle, Stephen M., Cooper, Gregory M., Batzoglou, Serafim, Brudno, Michael, Sidow, Arend, Stone, Eric A., Craig Venter, J., Payseur, Bret A., Bourque, Guillaume, López-Otín, Carlos, Puente, Xose S., Chakrabarti, Kushal, Chatterji, Sourav, Dewey, Colin, Pachter, Lior, Bray, Nicolas, Yap, Von Bing, Caspi, Anat, Tesler, Glenn, Pevzner, Pavel A., Haussler, David, Roskin, Krishna M., Baertsch, Robert, Clawson, Hiram, Furey, Terrence S., Hinrichs, Angie S., Karolchik, Donna, Kent, William J., Rosenbloom, Kate R., Trumbower, Heather, Weirauch, Matt, Cooper, David Neil

, Stenson, Peter, Ma, Bin, Brent, Michael, Arumugam, Manimozhiyan, Shteynberg, David, Copley, Richard R., Taylor, Martin S., Riethman, Harold, Mudunuri, Uma, Peterson, Jane, Guyer, Mark, Felsenfeld, Adam, Old, Susan, Mockrin, Stephen and Collins, Francis 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428 (6982) , pp. 493-521. 10.1038/nature02426

Webber, Caleb

and Barton, Geoffrey J. 2003. Increased coverage obtained by combination of methods for protein sequence database searching. Bioinformatics 19 (11) , pp. 1397-1403. 10.1093/bioinformatics/btg156

Webber, Caleb

and Barton, Geoffrey J. 2001. Estimation of p-values for global alignments of protein sequences. Bioinformatics 17 (12) , pp. 1158-1167. 10.1093/bioinformatics/17.12.1158

McCarthy, Linda C., Bihoreau, Marie-Therese, Kiguwa, Susanna L., Browne, Julie, Watanabe, Takeshi K., Hishigaki, Haretsugu, Tsuji, Atsushi, Kiel, Susanne, Webber, Caleb

, Davis, Maria E., Knights, Catherine, Smith, Angela, Critcher, Ricky, Huxtall, Patrick, Hudson Jr., James R., Ono, Toshihide, Hayashi, Hiroumi, Takagi, Toshihisa, Nakamura, Yusuke, Tanigami, Akira, Goodfellow, Peter N., Lathrop, G. Mark and James, Michael R. 2000. A whole-genome radiation hybrid panel and framework map of the rat genome. Mammalian Genome 11 (9) , pp. 791-795. 10.1007/s003350010132

Watanabe, Takeshi K., Bihoreau, Marie-Therese, McCarthy, Linda C., Kiguwa, Susanna L., Hishigaki, Haretsugu, Tsuji, Atsushi, Browne, Julie, Yamasaki, Yuki, Mizoguchi-Miyakita, Ayako, Oga, Keiko, Ono, Toshihide, Okuno, Shiro, Kanemoto, Naohide, Takahashi, Ei-ichi, Tomita, Kazuhiro, Hayashi, Hiromi, Adachi, Masakazu, Webber, Caleb

, Davis, Marie, Kiel, Susanne, Knights, Catherine, Smith, Angela, Critcher, Ricky, Miller, Jonathan, Thangarajah, Thiru, Day, Philip J. R., Hudson Jr., James R., Irie, Yasuo, Takagi, Toshihisa, Nakamura, Yusuke, Goodfellow, Peter N., Lathrop, G. Mark, Tanigami, Akira and James, Michael R. 1999. A radiation hybrid map of the rat genome containing 5,255 markers. Nature Genetics 22 , pp. 27-36. 10.1038/8737

Deloukas, P., Schuler, G. D., Gyapay, G., Beasley, E. M., Soderlund, C., Rodriguez-Tomé, P., Hui, L., Matise, T. C., McKusick, K. B., Beckmann, J. S., Bentolilia, S., Bihoreau, M. -T., Birren, B. B., Browne, J., Butler, A., Caslte, A. B., Chiannilkulchai, N., Clee, C., Day, P. J. R., Dehejia, A., Dibling, T., Drouot, N., Duprat, S., Fizames, C., Fox, S., Gelling, S., Green, L., Harrison, P., Hocking, R., Holloway, E., Hunt, S., Keil, S., Lijnzaad, P., Louis-Dit-Sully, C., Ma, J., Mendis, A., Miller, J., Morissette, J., Muselet, D., Nusbaum, H. C., Peck, A., Rozen, S., Simon, D., Slonim, D. K., Staples, R., Stein, L. D., Stewart, E. A., Suchard, M. A., Thangarajah, T., Vega-Czarny, N., Webber, C.

, Wu, X., Hudson, J., Auffray, C., Nomura, N., Sikela, J. M., Polymeropoulos, M. H., James, M. R., Lander, E. S., Hudson, T. J., Myers, R. M., Cox, D. R., Weissenback, J., Bogusky, M. S. and Bentley, D. R. 1998. A physical map of 30,000 human genes. Science 282 (5389) , pp. 744-746. 10.1126/science.282.5389.744

This list was generated on Mon Sep 16 06:33:32 2024 BST.